Cow genome map
| Conread name: | Thy1-THY010038D02 |
| Conread position: | 1-248 |
| Cow position: | chr6:18986390-18986639 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 87, 169 |
| Conread position: | 2-187 |
| Cow position: | chr6:61052723-61052531 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-208 |
| Cow position: | chr6:34492528-34492739 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 2-208 |
| Cow position: | chr6:34505671-34505460 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 2-221 |
| Cow position: | chr6:45936636-45936858 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-226 |
| Cow position: | chr6:66189408-66189181 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 93, 118 |
| Conread position: | 2-236 |
| Cow position: | chr6:183171-182930 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 2-236 |
| Cow position: | chr6:14143117-14142876 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 100, 81 |
| Conread position: | 2-236 |
| Cow position: | chr6:30272516-30272275 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-238 |
| Cow position: | chr6:33465337-33465580 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 2-246 |
| Cow position: | chr6:6094609-6094856 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 93, 124 |
| Conread position: | 2-248 |
| Cow position: | chr6:18496697-18496943 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 26, 38 |
| Conread position: | 2-248 |
| Cow position: | chr6:34237645-34237394 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 71, 45 |
| Conread position: | 2-248 |
| Cow position: | chr6:65849532-65849286 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 87, 141 |
| Conread position: | 2-249 |
| Cow position: | chr6:916416-916668 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 88, 245 |
| Conread position: | 2-249 |
| Cow position: | chr6:25375720-25375466 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 2-250 |
| Cow position: | chr6:328988-328733 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-250 |
| Cow position: | chr6:1536079-1536336 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-250 |
| Cow position: | chr6:1796292-1796041 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-250 |
| Cow position: | chr6:2377075-2377330 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-250 |
| Cow position: | chr6:5947405-5947149 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 100, 93 |
| Conread position: | 2-250 |
| Cow position: | chr6:7138960-7138709 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-250 |
| Cow position: | chr6:8536929-8536667 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 2-250 |
| Cow position: | chr6:11019032-11019283 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 93, 118 |
| Conread position: | 2-250 |
| Cow position: | chr6:12663942-12663689 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 93, 245 |
| Conread position: | 2-250 |
| Cow position: | chr6:13309010-13308759 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-250 |
| Cow position: | chr6:14133371-14133117 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 93, 152 |
| Conread position: | 2-250 |
| Cow position: | chr6:16050917-16050664 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 2-250 |
| Cow position: | chr6:16592344-16592595 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 93, 171 |
| Conread position: | 2-250 |
| Cow position: | chr6:16982424-16982169 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 2-250 |
| Cow position: | chr6:18913103-18912848 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 100, 227 |
| Conread position: | 2-250 |
| Cow position: | chr6:20351718-20351463 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-250 |
| Cow position: | chr6:20557578-20557325 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 91, 245 |
| Conread position: | 2-250 |
| Cow position: | chr6:21833275-21833021 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 93, 194 |
| Conread position: | 2-250 |
| Cow position: | chr6:28103491-28103237 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 93, 246 |
| Conread position: | 2-250 |
| Cow position: | chr6:28186462-28186207 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-250 |
| Cow position: | chr6:28400873-28400624 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 93, 118 |
| Conread position: | 2-250 |
| Cow position: | chr6:31813626-31813371 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-250 |
| Cow position: | chr6:34128831-34129083 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 93, 118 |
| Conread position: | 2-250 |
| Cow position: | chr6:37386953-37387208 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 2-250 |
| Cow position: | chr6:39349764-39350019 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-250 |
| Cow position: | chr6:40277446-40277694 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 93, 76 |
| Conread position: | 2-250 |
| Cow position: | chr6:41390081-41389826 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-250 |
| Cow position: | chr6:41676311-41676564 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 100, 137 |
| Conread position: | 2-250 |
| Cow position: | chr6:43620103-43620357 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 93, 134 |
| Conread position: | 2-250 |
| Cow position: | chr6:50486423-50486168 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-250 |
| Cow position: | chr6:51149312-51149568 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 2-250 |
| Cow position: | chr6:51716917-51717172 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-250 |
| Cow position: | chr6:55238066-55238321 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-250 |
| Cow position: | chr6:55539898-55539643 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-250 |
| Cow position: | chr6:60378534-60378789 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-250 |
| Cow position: | chr6:62664147-62664401 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 93, 204 |
| Conread position: | 2-250 |
| Cow position: | chr6:65820211-65819956 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-250 |
| Cow position: | chr6:68029548-68029803 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-251 |
| Cow position: | chr6:25216674-25216926 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-267 |
| Cow position: | chr6:53544472-53544742 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 93, 148 |
| Conread position: | 2-691 |
| Cow position: | chr6:45902514-45901821 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 93, 222 |
| Conread position: | 3-212 |
| Cow position: | chr6:6159046-6159262 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 3-247 |
| Cow position: | chr6:7161188-7161430 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 89, 21 |
| Conread position: | 3-250 |
| Cow position: | chr6:3887134-3886880 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 3-250 |
| Cow position: | chr6:28845766-28845497 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 145 |
| Conread position: | 11-230 |
| Cow position: | chr6:36530667-36530893 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 11-233 |
| Cow position: | chr6:35874329-35874099 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 11-236 |
| Cow position: | chr6:39911708-39911938 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 84, 185 |
| Conread position: | 11-249 |
| Cow position: | chr6:237475-237240 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 11-249 |
| Cow position: | chr6:39332148-39331905 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 84, 127 |
| Conread position: | 11-250 |
| Cow position: | chr6:5750312-5750558 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 11-250 |
| Cow position: | chr6:8756436-8756191 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 84, 164 |
| Conread position: | 11-250 |
| Cow position: | chr6:10043599-10043841 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 84, 109 |
| Conread position: | 11-250 |
| Cow position: | chr6:19104529-19104283 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 11-250 |
| Cow position: | chr6:25791318-25791072 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 11-250 |
| Cow position: | chr6:27152060-27151814 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 11-250 |
| Cow position: | chr6:38874278-38874032 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 11-250 |
| Cow position: | chr6:62577802-62577556 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 12-250 |
| Cow position: | chr6:65929626-65929877 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 83, 237 |
| Conread position: | 13-250 |
| Cow position: | chr6:40159120-40158878 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 79, 194 |
| Conread position: | 32-248 |
| Cow position: | chr6:61160600-61160819 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 62, 6 |
Show alignments to all cow chromosomes.