Cow genome map

Conread name: Thy1-THY010038D02

Conread position: 2-183
Cow position: chrX:16804930-16804742 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 93, 0

Conread position: 2-198
Cow position: chrX:20034197-20033994 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 140
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 93, 0

Conread position: 2-206
Cow position: chrX:28625417-28625206 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 101, 0

Conread position: 2-229
Cow position: chrX:16360898-16360663 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 94, 0

Conread position: 2-236
Cow position: chrX:4906782-4906543 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 166
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 93, 0

Conread position: 2-238
Cow position: chrX:2560736-2560496 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 163
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 93, 172

Conread position: 2-238
Cow position: chrX:21342620-21342858 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 160
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 75, 168

Conread position: 2-248
Cow position: chrX:11462784-11462532 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 171
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 93, 172

Conread position: 2-248
Cow position: chrX:15978743-15978490 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 176
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 93, 0

Conread position: 2-248
Cow position: chrX:29046655-29046906 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 183
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 86, 48

Conread position: 2-249
Cow position: chrX:2578635-2578884 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 169
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 93, 118

Conread position: 2-249
Cow position: chrX:3419009-3418755 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 174
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 93, 180

Conread position: 2-249
Cow position: chrX:5360218-5360472 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 176
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 83, 0

Conread position: 2-249
Cow position: chrX:7552597-7552343 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 176
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 93, 0

Conread position: 2-249
Cow position: chrX:39696979-39697231 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 171
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:2047300-2047549 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 172
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 76, 119

Conread position: 2-250
Cow position: chrX:3143047-3143317 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 191
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 95, 0

Conread position: 2-250
Cow position: chrX:5281570-5281319 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 100, 0

Conread position: 2-250
Cow position: chrX:5321503-5321248 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 174
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 90, 242

Conread position: 2-250
Cow position: chrX:5333219-5332968 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 175
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 93, 105

Conread position: 2-250
Cow position: chrX:7119701-7119958 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 175
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:7754115-7754370 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 180
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:8961613-8961361 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 172
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 75, 228

Conread position: 2-250
Cow position: chrX:9127294-9127549 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:10529578-10529321 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 176
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:11147130-11146873 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 179
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:12359099-12359354 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 176
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:12464217-12464471 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 182
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 26, 19

Conread position: 2-250
Cow position: chrX:12652282-12652027 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 176
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 83, 0

Conread position: 2-250
Cow position: chrX:13072237-13071982 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 179
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:13092797-13092542 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 179
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:13929521-13929270 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 174
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 91, 118

Conread position: 2-250
Cow position: chrX:16045180-16045435 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 177
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:18657592-18657341 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 93, 118

Conread position: 2-250
Cow position: chrX:19397985-19398241 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 178
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:19474939-19474685 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 184
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:19607885-19608140 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:20357791-20357536 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 175
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:20741418-20741164 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 179
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 93, 81

Conread position: 2-250
Cow position: chrX:21766841-21767096 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 175
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:22565476-22565221 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 179
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:22810104-22810359 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 174
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:23279236-23279490 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 171
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 93, 213

Conread position: 2-250
Cow position: chrX:23388338-23388084 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 171
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 93, 133

Conread position: 2-250
Cow position: chrX:24412237-24412491 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 176
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 73, 229

Conread position: 2-250
Cow position: chrX:24468911-24468659 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:26623600-26623339 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 195
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 100, 0

Conread position: 2-250
Cow position: chrX:28754128-28753873 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 179
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:29171572-29171317 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 176
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:30013204-30013459 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 176
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:30437116-30437371 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 180
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:31494945-31495203 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 181
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:34093618-34093363 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 183
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 93, 228

Conread position: 2-250
Cow position: chrX:35887302-35887555 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 176
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 100, 75

Conread position: 2-250
Cow position: chrX:36194111-36194366 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 177
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:36536521-36536266 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 175
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 93, 0

Conread position: 2-250
Cow position: chrX:43437695-43437440 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 177
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 93, 0

Conread position: 2-251
Cow position: chrX:27304152-27304407 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 181
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 93, 127

Conread position: 2-538
Cow position: chrX:2273512-2274054 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 173
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 93, 81

Conread position: 3-171
Cow position: chrX:22590629-22590453 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 137
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 36, 0

Conread position: 3-204
Cow position: chrX:21317677-21317887 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 94, 58

Conread position: 3-249
Cow position: chrX:18919859-18920108 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 174
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 75, 90

Conread position: 3-250
Cow position: chrX:731345-731096 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 135

Conread position: 3-250
Cow position: chrX:3397423-3397186 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 171
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 69, 103

Conread position: 3-250
Cow position: chrX:7810744-7810490 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 182
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 35, 0

Conread position: 4-250
Cow position: chrX:23394819-23395070 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 169
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 17

Conread position: 5-250
Cow position: chrX:387348-387602 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 181
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 34, 232

Conread position: 6-250
Cow position: chrX:15569699-15569450 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 33, 128

Conread position: 9-250
Cow position: chrX:24770639-24770391 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 170
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 86, 0

Conread position: 11-221
Cow position: chrX:6580162-6580379 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 84, 0

Conread position: 11-236
Cow position: chrX:30181707-30181475 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 162
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 89, 0

Conread position: 11-238
Cow position: chrX:10413741-10413512 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 172
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 17, 9

Conread position: 11-238
Cow position: chrX:12308545-12308311 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 162
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 84, 0

Conread position: 11-248
Cow position: chrX:5392960-5392717 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 173
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 91, 204

Conread position: 11-248
Cow position: chrX:42008850-42009092 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 55

Conread position: 11-249
Cow position: chrX:16781503-16781748 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 172
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 84, 0

Conread position: 11-249
Cow position: chrX:23453834-23453589 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 168
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 84, 0

Conread position: 11-249
Cow position: chrX:24445990-24445745 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 172
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 84, 0

Conread position: 11-250
Cow position: chrX:2486874-2487116 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 168
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 84, 0

Conread position: 11-250
Cow position: chrX:2500868-2501114 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 168
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 84, 0

Conread position: 11-250
Cow position: chrX:2814259-2814013 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 175
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 84, 0

Conread position: 11-250
Cow position: chrX:4766928-4767161 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 91, 150

Conread position: 11-250
Cow position: chrX:12345156-12345402 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 173
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 84, 0

Conread position: 11-250
Cow position: chrX:15177216-15176973 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 167
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 86, 192

Conread position: 11-250
Cow position: chrX:24730868-24731114 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 174
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 84, 0

Conread position: 11-250
Cow position: chrX:28587199-28587445 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 171
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 84, 0

Conread position: 11-250
Cow position: chrX:30167857-30167610 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 84, 0

Conread position: 11-250
Cow position: chrX:37814368-37814614 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 176
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 84, 0

Conread position: 14-251
Cow position: chrX:14461539-14461783 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 172
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 88, 0

Conread position: 29-232
Cow position: chrX:13888138-13888349 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 54, 191

Conread position: 32-250
Cow position: chrX:302344-302566 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 99, 0

Conread position: 32-250
Cow position: chrX:24807308-24807093 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 62, 71

Show alignments to all cow chromosomes.