Cow genome map
| Conread name: | Thy1-THY010043D03 |
| Conread position: | 1-352 |
| Cow position: | chr1:40497501-40497159 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 130, 9 |
| Conread position: | 3-309 |
| Cow position: | chr1:25119101-25119400 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 158, 91 |
| Conread position: | 8-355 |
| Cow position: | chr1:55202703-55203056 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 243 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 123, 83 |
| Conread position: | 13-288 |
| Cow position: | chr1:86614776-86614506 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 72, 88 |
| Conread position: | 14-353 |
| Cow position: | chr1:52753256-52753584 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 120, 80 |
| Conread position: | 20-355 |
| Cow position: | chr1:37306347-37306684 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 57, 81 |
| Conread position: | 27-321 |
| Cow position: | chr1:71045651-71045361 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 30-348 |
| Cow position: | chr1:80973720-80974037 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 94, 64 |
| Conread position: | 31-353 |
| Cow position: | chr1:73584510-73584836 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 103, 63 |
| Conread position: | 354-628 |
| Cow position: | chr1:81861590-81861314 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 75 |
| Conread position: | 354-658 |
| Cow position: | chr1:98657513-98657211 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 26, 151 |
| Conread position: | 354-671 |
| Cow position: | chr1:67316569-67316879 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 26, 42 |
| Conread position: | 356-632 |
| Cow position: | chr1:92008091-92007807 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 5 |
| Conread position: | 357-567 |
| Cow position: | chr1:56645190-56645409 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 82 |
| Conread position: | 357-594 |
| Cow position: | chr1:81778886-81779131 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 357-628 |
| Cow position: | chr1:65388712-65388991 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 207 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 25, 36 |
| Conread position: | 357-629 |
| Cow position: | chr1:40533609-40533325 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 23, 116 |
| Conread position: | 357-646 |
| Cow position: | chr1:77164907-77165202 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 30, 16 |
| Conread position: | 357-657 |
| Cow position: | chr1:54115681-54115981 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 23, 123 |
| Conread position: | 357-658 |
| Cow position: | chr1:52918029-52917718 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 254 |
| Conread position: | 357-661 |
| Cow position: | chr1:81926712-81926423 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 30, 65 |
| Conread position: | 357-662 |
| Cow position: | chr1:38384071-38383788 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 180, 44 |
| Conread position: | 357-664 |
| Cow position: | chr1:39481511-39481201 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 89 |
| Conread position: | 357-664 |
| Cow position: | chr1:57971141-57970848 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 25, 68 |
| Conread position: | 357-671 |
| Cow position: | chr1:32565494-32565180 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 235 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 25, 54 |
| Conread position: | 357-671 |
| Cow position: | chr1:61343281-61342965 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 249 |
| Conread position: | 357-672 |
| Cow position: | chr1:9378104-9377783 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 25, 60 |
| Conread position: | 357-672 |
| Cow position: | chr1:31400975-31400655 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 53, 75 |
| Conread position: | 357-672 |
| Cow position: | chr1:35599373-35599056 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 228 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 25, 246 |
| Conread position: | 357-672 |
| Cow position: | chr1:59206641-59206320 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 237 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 25, 42 |
| Conread position: | 357-672 |
| Cow position: | chr1:86593872-86593555 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 246 |
| Conread position: | 357-672 |
| Cow position: | chr1:88300770-88301085 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 30, 79 |
| Conread position: | 358-603 |
| Cow position: | chr1:57744774-57744523 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 358-661 |
| Cow position: | chr1:30306838-30306548 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 166, 22 |
| Conread position: | 358-661 |
| Cow position: | chr1:53366356-53366656 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 29, 120 |
| Conread position: | 358-667 |
| Cow position: | chr1:91901456-91901764 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 224 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 24, 244 |
| Conread position: | 361-662 |
| Cow position: | chr1:86612540-86612834 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 225 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 48, 12 |
| Conread position: | 361-667 |
| Cow position: | chr1:54392598-54392284 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 361-667 |
| Cow position: | chr1:86362908-86363208 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 361-672 |
| Cow position: | chr1:81305261-81305562 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 150, 43 |
| Conread position: | 362-587 |
| Cow position: | chr1:4276062-4276292 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 363-615 |
| Cow position: | chr1:30075315-30075570 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 19, 115 |
| Conread position: | 365-555 |
| Cow position: | chr1:98787627-98787825 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 367-644 |
| Cow position: | chr1:38421188-38421464 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 19, 44 |
| Conread position: | 369-672 |
| Cow position: | chr1:78362274-78362576 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 38, 90 |
| Conread position: | 371-666 |
| Cow position: | chr1:48827114-48827420 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 379-628 |
| Cow position: | chr1:18923125-18922869 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 133, 226 |
| Conread position: | 379-671 |
| Cow position: | chr1:101671886-101671604 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 125, 20 |
| Conread position: | 380-671 |
| Cow position: | chr1:89730054-89729761 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 140, 217 |
| Conread position: | 384-671 |
| Cow position: | chr1:93112905-93112623 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 16, 116 |
| Conread position: | 402-635 |
| Cow position: | chr1:11017874-11018114 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 209 |
| Conread position: | 402-671 |
| Cow position: | chr1:18763821-18763571 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 402-671 |
| Cow position: | chr1:79480484-79480235 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 403-672 |
| Cow position: | chr1:82383889-82384150 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 139, 42 |
| Conread position: | 409-672 |
| Cow position: | chr1:22760511-22760771 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 8, 64 |
| Conread position: | 410-671 |
| Cow position: | chr1:31497404-31497661 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 106, 18 |
| Conread position: | 437-672 |
| Cow position: | chr1:18281493-18281733 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 7, 169 |
| Conread position: | 457-664 |
| Cow position: | chr1:63314576-63314367 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 71, 169 |
Show alignments to all cow chromosomes.