Cow genome map
| Conread name: | Thy1-THY010043D03 |
| Conread position: | 1-351 |
| Cow position: | chr3:66738669-66738324 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 242 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 81, 9 |
| Conread position: | 1-355 |
| Cow position: | chr3:42461592-42461241 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 253 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 133, 9 |
| Conread position: | 1-355 |
| Cow position: | chr3:45647574-45647210 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 9, 96 |
| Conread position: | 5-353 |
| Cow position: | chr3:33327593-33327240 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 248 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 117, 89 |
| Conread position: | 7-312 |
| Cow position: | chr3:48530524-48530228 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 117, 87 |
| Conread position: | 17-278 |
| Cow position: | chr3:54789846-54789599 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 113, 9 |
| Conread position: | 17-355 |
| Cow position: | chr3:2628195-2627870 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 22, 9 |
| Conread position: | 30-355 |
| Cow position: | chr3:50329211-50329525 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 104, 64 |
| Conread position: | 30-357 |
| Cow position: | chr3:8052900-8053227 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 70 |
| Conread position: | 32-312 |
| Cow position: | chr3:53222780-53223058 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 92, 60 |
| Conread position: | 95-384 |
| Cow position: | chr3:6880729-6880447 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 186, 76 |
| Conread position: | 354-671 |
| Cow position: | chr3:59331756-59332084 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 250 |
| Conread position: | 354-672 |
| Cow position: | chr3:49335515-49335827 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 43 |
| Conread position: | 355-672 |
| Cow position: | chr3:38491756-38492079 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 25, 98 |
| Conread position: | 357-594 |
| Cow position: | chr3:1031277-1031520 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 25, 234 |
| Conread position: | 357-628 |
| Cow position: | chr3:27865481-27865759 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 25, 96 |
| Conread position: | 357-650 |
| Cow position: | chr3:70889586-70889874 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 162, 240 |
| Conread position: | 357-661 |
| Cow position: | chr3:21027084-21026789 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 27, 46 |
| Conread position: | 357-672 |
| Cow position: | chr3:24264506-24264828 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 251 |
| Conread position: | 357-672 |
| Cow position: | chr3:30616631-30616311 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 249 |
| Conread position: | 357-672 |
| Cow position: | chr3:33844288-33843980 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 22, 54 |
| Conread position: | 357-672 |
| Cow position: | chr3:40337834-40337517 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 246 |
| Conread position: | 357-672 |
| Cow position: | chr3:41208290-41207970 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 250 |
| Conread position: | 357-672 |
| Cow position: | chr3:49563315-49563636 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 250 |
| Conread position: | 358-663 |
| Cow position: | chr3:1504415-1504719 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 26, 114 |
| Conread position: | 358-671 |
| Cow position: | chr3:35618894-35619211 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 232 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 359-672 |
| Cow position: | chr3:49908705-49908386 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 23, 248 |
| Conread position: | 361-576 |
| Cow position: | chr3:53881171-53880949 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 362-661 |
| Cow position: | chr3:576997-577289 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 25, 81 |
| Conread position: | 362-671 |
| Cow position: | chr3:74848835-74848523 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 14, 38 |
| Conread position: | 373-648 |
| Cow position: | chr3:79143311-79143585 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 35, 220 |
| Conread position: | 378-672 |
| Cow position: | chr3:22085082-22084784 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 20, 43 |
| Conread position: | 379-642 |
| Cow position: | chr3:77445995-77446259 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 91 |
| Conread position: | 387-672 |
| Cow position: | chr3:44926163-44926448 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 206 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 141, 214 |
| Conread position: | 417-670 |
| Cow position: | chr3:80305861-80306110 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 120, 181 |
| Conread position: | 423-648 |
| Cow position: | chr3:80478697-80478479 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 47, 0 |
Show alignments to all cow chromosomes.