Cow genome map
| Conread name: | Thy1-THY010043D03 |
| Conread position: | 1-315 |
| Cow position: | chr5:41469751-41469446 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 20, 11 |
| Conread position: | 1-351 |
| Cow position: | chr5:45940669-45941016 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 10, 130 |
| Conread position: | 20-355 |
| Cow position: | chr5:28946137-28946461 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 50, 30 |
| Conread position: | 27-355 |
| Cow position: | chr5:44752395-44752716 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 107, 70 |
| Conread position: | 29-672 |
| Cow position: | chr5:46778406-46779049 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 221 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 499, 572 |
| Conread position: | 187-313 |
| Cow position: | chr5:66972165-66972039 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 354-672 |
| Cow position: | chr5:25902252-25901937 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 43 |
| Conread position: | 354-672 |
| Cow position: | chr5:42043125-42043431 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 63, 22 |
| Conread position: | 355-632 |
| Cow position: | chr5:28024911-28025180 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 27, 101 |
| Conread position: | 357-522 |
| Cow position: | chr5:4755964-4755797 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 357-542 |
| Cow position: | chr5:54858885-54858695 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 357-594 |
| Cow position: | chr5:31708800-31709048 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 357-646 |
| Cow position: | chr5:24219374-24219656 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 212 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 23, 157 |
| Conread position: | 357-662 |
| Cow position: | chr5:58550204-58550502 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 19, 178 |
| Conread position: | 357-667 |
| Cow position: | chr5:51745438-51745751 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 26, 157 |
| Conread position: | 357-668 |
| Cow position: | chr5:70401122-70401434 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 23, 69 |
| Conread position: | 357-670 |
| Cow position: | chr5:18703872-18704188 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 237 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 28, 173 |
| Conread position: | 357-671 |
| Cow position: | chr5:18399275-18398958 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 27, 54 |
| Conread position: | 357-671 |
| Cow position: | chr5:24100862-24101181 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 234 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 25, 82 |
| Conread position: | 357-671 |
| Cow position: | chr5:73486710-73486392 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 250 |
| Conread position: | 358-672 |
| Cow position: | chr5:64010638-64010323 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 31, 52 |
| Conread position: | 359-662 |
| Cow position: | chr5:48806237-48805928 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 19, 248 |
| Conread position: | 361-613 |
| Cow position: | chr5:24644643-24644384 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 19, 244 |
| Conread position: | 361-664 |
| Cow position: | chr5:40791072-40791374 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 223 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 19, 155 |
| Conread position: | 361-672 |
| Cow position: | chr5:7583776-7583476 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 26, 50 |
| Conread position: | 362-649 |
| Cow position: | chr5:59278361-59278655 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 245 |
| Conread position: | 372-672 |
| Cow position: | chr5:59770282-59770580 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 385-662 |
| Cow position: | chr5:26095800-26096075 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 121, 144 |
| Conread position: | 393-635 |
| Cow position: | chr5:41955132-41954900 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 38 |
| Conread position: | 396-662 |
| Cow position: | chr5:49756068-49755804 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 116, 84 |
| Conread position: | 407-672 |
| Cow position: | chr5:7810263-7809997 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 103, 193 |
| Conread position: | 415-672 |
| Cow position: | chr5:9003840-9003579 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 89, 190 |
| Conread position: | 416-671 |
| Cow position: | chr5:28948467-28948212 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 96, 66 |
| Conread position: | 417-658 |
| Cow position: | chr5:29743280-29743039 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 110, 184 |
| Conread position: | 422-668 |
| Cow position: | chr5:32365047-32365294 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 99, 183 |
| Conread position: | 471-672 |
| Cow position: | chr5:12502837-12502639 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 58, 79 |
Show alignments to all cow chromosomes.