Cow genome map
| Conread name: | Thy1-THY010043D03 |
| Conread position: | 7-308 |
| Cow position: | chr9:4285155-4284860 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 72, 90 |
| Conread position: | 7-355 |
| Cow position: | chr9:21674869-21674525 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 71, 18 |
| Conread position: | 8-184 |
| Cow position: | chr9:44408161-44408332 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 8-321 |
| Cow position: | chr9:30440487-30440174 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 61, 92 |
| Conread position: | 12-313 |
| Cow position: | chr9:16300440-16300150 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 151, 23 |
| Conread position: | 13-352 |
| Cow position: | chr9:41317842-41317499 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 114, 85 |
| Conread position: | 17-338 |
| Cow position: | chr9:36586690-36586384 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 117, 77 |
| Conread position: | 17-353 |
| Cow position: | chr9:21462721-21462390 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 73, 153 |
| Conread position: | 30-353 |
| Cow position: | chr9:35101009-35101330 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 94, 67 |
| Conread position: | 350-637 |
| Cow position: | chr9:6978510-6978797 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 187, 82 |
| Conread position: | 357-529 |
| Cow position: | chr9:31091464-31091637 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 30, 75 |
| Conread position: | 357-552 |
| Cow position: | chr9:2865711-2865517 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 103 |
| Conread position: | 357-594 |
| Cow position: | chr9:6884608-6884856 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 357-604 |
| Cow position: | chr9:9367279-9367526 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 30, 68 |
| Conread position: | 357-662 |
| Cow position: | chr9:47005020-47005332 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 25, 251 |
| Conread position: | 357-670 |
| Cow position: | chr9:28356844-28357162 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 28, 107 |
| Conread position: | 357-671 |
| Cow position: | chr9:31809861-31810177 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 246 |
| Conread position: | 357-672 |
| Cow position: | chr9:11503951-11504272 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 273 |
| Conread position: | 357-672 |
| Cow position: | chr9:14002321-14002639 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 247 |
| Conread position: | 357-672 |
| Cow position: | chr9:30829034-30829351 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 246 |
| Conread position: | 357-672 |
| Cow position: | chr9:47263021-47262705 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 19, 54 |
| Conread position: | 357-672 |
| Cow position: | chr9:59430796-59431114 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 23, 52 |
| Conread position: | 357-672 |
| Cow position: | chr9:62716814-62717127 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 8, 189 |
| Conread position: | 358-671 |
| Cow position: | chr9:50775124-50775441 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 359-672 |
| Cow position: | chr9:52722705-52723014 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 21, 114 |
| Conread position: | 361-672 |
| Cow position: | chr9:30437996-30438305 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 30, 69 |
| Conread position: | 362-648 |
| Cow position: | chr9:4648349-4648061 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 18, 184 |
| Conread position: | 362-672 |
| Cow position: | chr9:30489874-30490183 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 25, 150 |
| Conread position: | 363-661 |
| Cow position: | chr9:37067149-37067435 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 19, 102 |
| Conread position: | 363-672 |
| Cow position: | chr9:10109949-10110247 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 174, 42 |
| Conread position: | 383-658 |
| Cow position: | chr9:24979346-24979079 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 76, 36 |
| Conread position: | 383-672 |
| Cow position: | chr9:27291658-27291362 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 225 |
| Conread position: | 397-648 |
| Cow position: | chr9:46669316-46669560 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 239, 115 |
| Conread position: | 407-617 |
| Cow position: | chr9:16821812-16821600 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 96, 15 |
| Conread position: | 409-630 |
| Cow position: | chr9:39729251-39729023 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 114, 85 |
| Conread position: | 409-672 |
| Cow position: | chr9:8739163-8738897 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 103, 196 |
| Conread position: | 412-672 |
| Cow position: | chr9:9312978-9312717 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 48, 24 |
| Conread position: | 423-669 |
| Cow position: | chr9:17301780-17301535 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 105, 178 |
| Conread position: | 453-671 |
| Cow position: | chr9:56155504-56155286 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 40, 149 |
Show alignments to all cow chromosomes.