Cow genome map
| Conread name: | Thy1-THY010060E08 |
| Conread position: | 582-842 |
| Cow position: | chr11:10699775-10699510 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 21, 12 |
| Conread position: | 589-842 |
| Cow position: | chr11:4061892-4061640 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 35, 86 |
| Conread position: | 600-842 |
| Cow position: | chr11:41422920-41422669 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 10, 75 |
| Conread position: | 602-787 |
| Cow position: | chr11:3494973-3495158 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 602-787 |
| Cow position: | chr11:52421461-52421643 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 602-836 |
| Cow position: | chr11:30254223-30254460 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 602-841 |
| Cow position: | chr11:8265510-8265764 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 602-842 |
| Cow position: | chr11:418732-418485 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 602-842 |
| Cow position: | chr11:4268153-4267909 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 44 |
| Conread position: | 602-842 |
| Cow position: | chr11:7121975-7121727 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 602-842 |
| Cow position: | chr11:7720393-7720150 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 602-842 |
| Cow position: | chr11:19100493-19100247 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 602-842 |
| Cow position: | chr11:20732230-20731986 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 602-842 |
| Cow position: | chr11:24292448-24292693 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 21, 72 |
| Conread position: | 602-842 |
| Cow position: | chr11:26549491-26549736 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 602-842 |
| Cow position: | chr11:32078791-32078543 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 602-842 |
| Cow position: | chr11:38575494-38575246 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 602-842 |
| Cow position: | chr11:38600943-38600699 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 602-842 |
| Cow position: | chr11:44254073-44254313 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 602-842 |
| Cow position: | chr11:44515958-44515712 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 602-842 |
| Cow position: | chr11:44581239-44580993 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 602-842 |
| Cow position: | chr11:47737549-47737305 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 602-842 |
| Cow position: | chr11:47973863-47973615 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 21, 72 |
| Conread position: | 602-842 |
| Cow position: | chr11:53430033-53429785 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 602-842 |
| Cow position: | chr11:63391487-63391239 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 602-842 |
| Cow position: | chr11:84966106-84966354 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 603-837 |
| Cow position: | chr11:12356404-12356163 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 22, 71 |
| Conread position: | 603-839 |
| Cow position: | chr11:35862638-35862394 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 23, 71 |
| Conread position: | 603-842 |
| Cow position: | chr11:33602640-33602393 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 71 |
| Conread position: | 612-836 |
| Cow position: | chr11:12504843-12504619 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 173, 55 |
| Conread position: | 612-839 |
| Cow position: | chr11:26785256-26785489 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 143, 61 |
| Conread position: | 612-842 |
| Cow position: | chr11:49237950-49237717 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 162, 59 |
| Conread position: | 614-839 |
| Cow position: | chr11:87138212-87137981 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 13, 60 |
| Conread position: | 614-842 |
| Cow position: | chr11:12095795-12096031 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 13, 59 |
| Conread position: | 614-842 |
| Cow position: | chr11:31928176-31928409 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 12, 60 |
| Conread position: | 615-839 |
| Cow position: | chr11:76372055-76371821 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 11, 22 |
| Conread position: | 622-842 |
| Cow position: | chr11:39805729-39805952 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 7, 50 |
| Conread position: | 625-833 |
| Cow position: | chr11:32284903-32284694 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 149, 44 |
| Conread position: | 627-842 |
| Cow position: | chr11:3227753-3227973 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 147, 32 |
| Conread position: | 628-734 |
| Cow position: | chr11:83325684-83325580 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 628-775 |
| Cow position: | chr11:42371838-42371978 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 628-777 |
| Cow position: | chr11:78671834-78671689 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 628-782 |
| Cow position: | chr11:11590986-11591138 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 118, 43 |
| Conread position: | 628-782 |
| Cow position: | chr11:30121625-30121477 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 628-789 |
| Cow position: | chr11:9223302-9223144 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 628-836 |
| Cow position: | chr11:25183065-25183269 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 135, 43 |
| Conread position: | 628-839 |
| Cow position: | chr11:4054278-4054064 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 156, 43 |
| Conread position: | 628-840 |
| Cow position: | chr11:71331523-71331737 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 149, 43 |
| Conread position: | 628-842 |
| Cow position: | chr11:8017740-8017961 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 68 |
| Conread position: | 628-842 |
| Cow position: | chr11:10092694-10092911 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 123, 45 |
| Conread position: | 628-842 |
| Cow position: | chr11:10850141-10850357 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 149, 43 |
| Conread position: | 628-842 |
| Cow position: | chr11:15126835-15127054 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 149, 45 |
| Conread position: | 628-842 |
| Cow position: | chr11:15994183-15994399 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 156, 45 |
| Conread position: | 628-842 |
| Cow position: | chr11:22934570-22934353 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 156, 20 |
| Conread position: | 628-842 |
| Cow position: | chr11:26122900-26122681 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 149, 43 |
| Conread position: | 628-842 |
| Cow position: | chr11:38833452-38833236 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 148, 43 |
| Conread position: | 628-842 |
| Cow position: | chr11:41168677-41168458 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 149, 31 |
| Conread position: | 628-842 |
| Cow position: | chr11:49172481-49172264 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 161, 43 |
| Conread position: | 628-842 |
| Cow position: | chr11:59627313-59627095 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 134, 31 |
| Conread position: | 628-842 |
| Cow position: | chr11:67864252-67864037 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 153, 40 |
| Conread position: | 628-842 |
| Cow position: | chr11:78357800-78358017 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 146, 30 |
| Conread position: | 628-842 |
| Cow position: | chr11:78781110-78780899 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 146, 20 |
| Conread position: | 629-842 |
| Cow position: | chr11:1488088-1487873 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 154, 42 |
| Conread position: | 630-837 |
| Cow position: | chr11:37070312-37070116 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 630-839 |
| Cow position: | chr11:81339364-81339153 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 147, 38 |
| Conread position: | 630-842 |
| Cow position: | chr11:2349972-2350189 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 153, 41 |
| Conread position: | 631-815 |
| Cow position: | chr11:52845565-52845746 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 631-842 |
| Cow position: | chr11:13063963-13063748 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 160, 37 |
| Conread position: | 633-839 |
| Cow position: | chr11:28124537-28124748 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 152, 38 |
| Conread position: | 633-842 |
| Cow position: | chr11:9732649-9732438 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 152, 38 |
| Conread position: | 633-842 |
| Cow position: | chr11:25099147-25098933 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 150, 38 |
| Conread position: | 633-842 |
| Cow position: | chr11:32478790-32478576 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 156, 38 |
| Conread position: | 633-842 |
| Cow position: | chr11:41744583-41744797 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 150, 38 |
| Conread position: | 633-842 |
| Cow position: | chr11:50835590-50835376 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 152, 38 |
| Conread position: | 633-842 |
| Cow position: | chr11:75392275-75392489 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 150, 38 |
| Conread position: | 633-842 |
| Cow position: | chr11:78792042-78791828 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 150, 38 |
| Conread position: | 634-842 |
| Cow position: | chr11:39585698-39585485 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 149, 37 |
| Conread position: | 638-840 |
| Cow position: | chr11:49013033-49012826 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 146, 33 |
| Conread position: | 655-842 |
| Cow position: | chr11:64384961-64385157 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 656-835 |
| Cow position: | chr11:21470845-21471028 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 128, 56 |
| Conread position: | 683-839 |
| Cow position: | chr11:14735270-14735107 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 710-842 |
| Cow position: | chr11:261603-261470 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 71, 55 |
Show alignments to all cow chromosomes.