Cow genome map
| Conread name: | Thy1-THY010060E08 |
| Conread position: | 589-840 |
| Cow position: | chr21:3922662-3922920 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 37, 85 |
| Conread position: | 599-842 |
| Cow position: | chr21:35143454-35143205 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 11, 76 |
| Conread position: | 602-781 |
| Cow position: | chr21:4036707-4036884 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 24, 49 |
| Conread position: | 602-787 |
| Cow position: | chr21:47976290-47976475 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 602-842 |
| Cow position: | chr21:4091791-4092035 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 602-842 |
| Cow position: | chr21:13112932-13112691 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 24, 49 |
| Conread position: | 602-842 |
| Cow position: | chr21:27068507-27068259 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 602-842 |
| Cow position: | chr21:27285903-27286146 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 23, 74 |
| Conread position: | 602-842 |
| Cow position: | chr21:30596635-30596387 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 602-842 |
| Cow position: | chr21:31513863-31513617 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 602-842 |
| Cow position: | chr21:32397597-32397349 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 23, 60 |
| Conread position: | 602-842 |
| Cow position: | chr21:33318049-33317802 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 23, 76 |
| Conread position: | 602-842 |
| Cow position: | chr21:37373680-37373928 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 602-842 |
| Cow position: | chr21:41797269-41797021 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 24, 74 |
| Conread position: | 602-842 |
| Cow position: | chr21:44763502-44763260 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 612-839 |
| Cow position: | chr21:37123889-37123661 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 177, 59 |
| Conread position: | 613-842 |
| Cow position: | chr21:38024566-38024793 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 173, 41 |
| Conread position: | 617-839 |
| Cow position: | chr21:21917955-21918182 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 97, 54 |
| Conread position: | 622-842 |
| Cow position: | chr21:49091963-49091739 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 106, 45 |
| Conread position: | 626-842 |
| Cow position: | chr21:3805408-3805628 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 157, 47 |
| Conread position: | 626-842 |
| Cow position: | chr21:39427557-39427778 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 157, 45 |
| Conread position: | 628-758 |
| Cow position: | chr21:48487248-48487375 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 121, 28 |
| Conread position: | 628-789 |
| Cow position: | chr21:5019629-5019786 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 628-839 |
| Cow position: | chr21:1195028-1195236 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 145, 43 |
| Conread position: | 628-839 |
| Cow position: | chr21:5011253-5011038 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 127, 43 |
| Conread position: | 628-839 |
| Cow position: | chr21:7154817-7155032 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 148, 43 |
| Conread position: | 628-839 |
| Cow position: | chr21:7163498-7163282 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 150, 45 |
| Conread position: | 628-840 |
| Cow position: | chr21:995943-995729 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 109, 45 |
| Conread position: | 628-841 |
| Cow position: | chr21:28987626-28987835 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 153, 35 |
| Conread position: | 628-842 |
| Cow position: | chr21:2879341-2879126 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 156, 43 |
| Conread position: | 628-842 |
| Cow position: | chr21:4186431-4186648 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 107, 11 |
| Conread position: | 628-842 |
| Cow position: | chr21:17143159-17143378 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 156, 43 |
| Conread position: | 628-842 |
| Cow position: | chr21:26401267-26401065 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 628-842 |
| Cow position: | chr21:28853363-28853143 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 115, 43 |
| Conread position: | 628-842 |
| Cow position: | chr21:34656442-34656662 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 74, 54 |
| Conread position: | 628-842 |
| Cow position: | chr21:36978420-36978206 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 152, 45 |
| Conread position: | 628-842 |
| Cow position: | chr21:47647819-47648037 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 149, 43 |
| Conread position: | 628-842 |
| Cow position: | chr21:48529935-48529720 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 127, 43 |
| Conread position: | 630-840 |
| Cow position: | chr21:24299036-24298828 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 136, 41 |
| Conread position: | 630-842 |
| Cow position: | chr21:15248197-15247979 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 125, 44 |
| Conread position: | 630-842 |
| Cow position: | chr21:22462679-22462896 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 150, 41 |
| Conread position: | 631-842 |
| Cow position: | chr21:2513337-2513553 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 124, 40 |
| Conread position: | 631-842 |
| Cow position: | chr21:6966974-6966765 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 156, 40 |
| Conread position: | 631-842 |
| Cow position: | chr21:26634672-26634457 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 152, 40 |
| Conread position: | 631-842 |
| Cow position: | chr21:27621011-27620796 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 158, 40 |
| Conread position: | 631-842 |
| Cow position: | chr21:46758406-46758609 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 123, 34 |
| Conread position: | 633-842 |
| Cow position: | chr21:4481784-4481998 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 150, 38 |
| Conread position: | 633-842 |
| Cow position: | chr21:7063182-7062968 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 152, 38 |
| Conread position: | 633-842 |
| Cow position: | chr21:11291177-11291390 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 156, 38 |
| Conread position: | 638-842 |
| Cow position: | chr21:10852761-10852967 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 150, 33 |
| Conread position: | 654-839 |
| Cow position: | chr21:24694663-24694843 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 680-842 |
| Cow position: | chr21:15398444-15398274 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 687-842 |
| Cow position: | chr21:10519357-10519520 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 96, 0 |
Show alignments to all cow chromosomes.