Cow genome map
| Conread name: | Thy1-THY010060E08 |
| Conread position: | 601-842 |
| Cow position: | chr9:10938902-10939148 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 25, 73 |
| Conread position: | 602-787 |
| Cow position: | chr9:38678312-38678497 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 24, 49 |
| Conread position: | 602-840 |
| Cow position: | chr9:30674247-30674493 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 602-842 |
| Cow position: | chr9:2680751-2680999 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 602-842 |
| Cow position: | chr9:19157103-19156856 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 23, 77 |
| Conread position: | 602-842 |
| Cow position: | chr9:21411489-21411734 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 602-842 |
| Cow position: | chr9:28680152-28680399 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 24, 60 |
| Conread position: | 602-842 |
| Cow position: | chr9:30828933-30829180 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 25, 71 |
| Conread position: | 602-842 |
| Cow position: | chr9:34240922-34240675 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 24, 49 |
| Conread position: | 602-842 |
| Cow position: | chr9:42311872-42312117 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 602-842 |
| Cow position: | chr9:45875696-45875944 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 602-842 |
| Cow position: | chr9:47044147-47044395 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 602-842 |
| Cow position: | chr9:64013044-64012796 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 603-842 |
| Cow position: | chr9:17303786-17303544 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 22, 71 |
| Conread position: | 603-842 |
| Cow position: | chr9:18507646-18507402 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 22, 59 |
| Conread position: | 604-782 |
| Cow position: | chr9:5861682-5861509 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 611-842 |
| Cow position: | chr9:35593890-35593655 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 13, 56 |
| Conread position: | 611-842 |
| Cow position: | chr9:59508977-59508738 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 186 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 55, 140 |
| Conread position: | 612-838 |
| Cow position: | chr9:8164698-8164477 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 166, 54 |
| Conread position: | 614-840 |
| Cow position: | chr9:31091374-31091607 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 15, 60 |
| Conread position: | 614-842 |
| Cow position: | chr9:10856208-10856447 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 59 |
| Conread position: | 621-842 |
| Cow position: | chr9:22474093-22473864 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 625-842 |
| Cow position: | chr9:11712327-11712537 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 156, 46 |
| Conread position: | 626-782 |
| Cow position: | chr9:59538308-59538461 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 626-839 |
| Cow position: | chr9:239306-239086 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 32, 166 |
| Conread position: | 626-842 |
| Cow position: | chr9:2526496-2526714 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 157, 22 |
| Conread position: | 626-842 |
| Cow position: | chr9:3729034-3729256 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 156, 33 |
| Conread position: | 628-782 |
| Cow position: | chr9:2213353-2213502 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 628-782 |
| Cow position: | chr9:12182211-12182064 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 20 |
| Conread position: | 628-782 |
| Cow position: | chr9:33593344-33593495 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 628-813 |
| Cow position: | chr9:56745929-56745742 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 105, 31 |
| Conread position: | 628-826 |
| Cow position: | chr9:9561259-9561059 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 148, 47 |
| Conread position: | 628-836 |
| Cow position: | chr9:13473572-13473361 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 20 |
| Conread position: | 628-838 |
| Cow position: | chr9:61238734-61238519 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 160, 43 |
| Conread position: | 628-839 |
| Cow position: | chr9:52722630-52722846 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 101, 43 |
| Conread position: | 628-840 |
| Cow position: | chr9:9198323-9198537 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 156, 20 |
| Conread position: | 628-840 |
| Cow position: | chr9:10324024-10324238 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 162, 43 |
| Conread position: | 628-842 |
| Cow position: | chr9:2485408-2485192 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 156, 43 |
| Conread position: | 628-842 |
| Cow position: | chr9:6251468-6251695 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 628-842 |
| Cow position: | chr9:7059857-7059638 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 162, 43 |
| Conread position: | 628-842 |
| Cow position: | chr9:9015280-9015499 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 150, 43 |
| Conread position: | 628-842 |
| Cow position: | chr9:16177800-16178019 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 149, 43 |
| Conread position: | 628-842 |
| Cow position: | chr9:18023153-18023364 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 168 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 168, 31 |
| Conread position: | 628-842 |
| Cow position: | chr9:28024016-28024234 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 127, 43 |
| Conread position: | 628-842 |
| Cow position: | chr9:31809791-31810007 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 160, 42 |
| Conread position: | 628-842 |
| Cow position: | chr9:32971583-32971802 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 156, 43 |
| Conread position: | 628-842 |
| Cow position: | chr9:43303013-43302795 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 156, 29 |
| Conread position: | 628-842 |
| Cow position: | chr9:47004947-47005166 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 156, 43 |
| Conread position: | 628-842 |
| Cow position: | chr9:50775051-50775267 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 52, 39 |
| Conread position: | 628-842 |
| Cow position: | chr9:59480643-59480424 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 161, 43 |
| Conread position: | 629-789 |
| Cow position: | chr9:35936806-35936645 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 629-842 |
| Cow position: | chr9:28658842-28658624 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 148, 30 |
| Conread position: | 630-804 |
| Cow position: | chr9:128983-128814 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 630-835 |
| Cow position: | chr9:59430725-59430933 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 120, 41 |
| Conread position: | 630-839 |
| Cow position: | chr9:3577275-3577061 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 155, 41 |
| Conread position: | 630-840 |
| Cow position: | chr9:20175497-20175296 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 151, 34 |
| Conread position: | 630-842 |
| Cow position: | chr9:1638955-1639169 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 87, 36 |
| Conread position: | 631-839 |
| Cow position: | chr9:17062177-17061966 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 152, 40 |
| Conread position: | 631-842 |
| Cow position: | chr9:44203860-44203644 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 152, 40 |
| Conread position: | 633-842 |
| Cow position: | chr9:1249783-1249569 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 156, 38 |
| Conread position: | 633-842 |
| Cow position: | chr9:5453463-5453677 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 150, 38 |
| Conread position: | 633-842 |
| Cow position: | chr9:6921544-6921330 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 150, 38 |
| Conread position: | 633-842 |
| Cow position: | chr9:26421762-26421551 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 150, 37 |
| Conread position: | 633-842 |
| Cow position: | chr9:50326056-50326269 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 152, 15 |
| Conread position: | 633-842 |
| Cow position: | chr9:52525368-52525582 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 150, 38 |
| Conread position: | 633-842 |
| Cow position: | chr9:56175985-56176199 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 152, 38 |
| Conread position: | 635-840 |
| Cow position: | chr9:8739273-8739073 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 635-842 |
| Cow position: | chr9:203075-202866 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 150, 36 |
| Conread position: | 636-842 |
| Cow position: | chr9:3412703-3412491 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 167 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 148, 36 |
| Conread position: | 638-839 |
| Cow position: | chr9:10759678-10759875 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 147, 20 |
| Conread position: | 639-842 |
| Cow position: | chr9:1072072-1071861 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 12, 20 |
| Conread position: | 640-839 |
| Cow position: | chr9:27098560-27098769 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 63 |
| Conread position: | 649-839 |
| Cow position: | chr9:20940680-20940878 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 81 |
| Conread position: | 650-842 |
| Cow position: | chr9:30437943-30438135 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 652-841 |
| Cow position: | chr9:31113383-31113579 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 39, 24 |
| Conread position: | 656-842 |
| Cow position: | chr9:55797867-55797677 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 659-836 |
| Cow position: | chr9:22320467-22320285 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 124, 27 |
| Conread position: | 659-842 |
| Cow position: | chr9:26123068-26123260 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 661-842 |
| Cow position: | chr9:20577068-20577255 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 123, 88 |
| Conread position: | 676-840 |
| Cow position: | chr9:8952889-8952719 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 110, 66 |
| Conread position: | 676-842 |
| Cow position: | chr9:18778811-18778636 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 693-842 |
| Cow position: | chr9:35544261-35544104 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 90, 0 |
Show alignments to all cow chromosomes.