Cow genome map

Conread name: Thy1-THY010060E08

Conread position: 254-842
Cow position: chrX:29172037-29171448 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 165
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 530, 417

Conread position: 602-762
Cow position: chrX:15622402-15622246 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 69, 0

Conread position: 602-787
Cow position: chrX:673115-672932 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 24, 58

Conread position: 602-787
Cow position: chrX:17053647-17053830 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 6, 74

Conread position: 602-787
Cow position: chrX:31979761-31979580 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 24, 60

Conread position: 602-839
Cow position: chrX:45375947-45375701 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 173
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 13, 73

Conread position: 602-840
Cow position: chrX:2486741-2486987 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 173
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 24, 72

Conread position: 602-840
Cow position: chrX:21342499-21342738 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 171
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 24, 72

Conread position: 602-840
Cow position: chrX:21831600-21831846 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 179
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 24, 72

Conread position: 602-842
Cow position: chrX:1549068-1549314 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 24, 72

Conread position: 602-842
Cow position: chrX:2480541-2480295 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 172
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 23, 76

Conread position: 602-842
Cow position: chrX:2578511-2578759 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 176
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 24, 72

Conread position: 602-842
Cow position: chrX:9010424-9010666 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 178
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 24, 72

Conread position: 602-842
Cow position: chrX:11462908-11462660 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 24, 72

Conread position: 602-842
Cow position: chrX:15978867-15978619 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 24, 72

Conread position: 602-842
Cow position: chrX:16045063-16045304 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 176
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 24, 68

Conread position: 602-842
Cow position: chrX:18657716-18657468 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 186
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 24, 72

Conread position: 602-842
Cow position: chrX:20741542-20741295 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 183
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 24, 72

Conread position: 602-842
Cow position: chrX:21225565-21225813 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 23, 49

Conread position: 602-842
Cow position: chrX:21751573-21751325 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 175
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 24, 72

Conread position: 602-842
Cow position: chrX:24730735-24730983 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 185
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 24, 49

Conread position: 602-842
Cow position: chrX:27304037-27304276 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 24, 72

Conread position: 602-842
Cow position: chrX:27591929-27591687 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 175
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 25, 49

Conread position: 602-842
Cow position: chrX:29095230-29094982 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 183
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 24, 72

Conread position: 602-842
Cow position: chrX:30167987-30167742 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 176
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 24, 72

Conread position: 602-842
Cow position: chrX:32065077-32064829 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 24, 72

Conread position: 602-842
Cow position: chrX:35531947-35532192 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 179
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 24, 72

Conread position: 602-842
Cow position: chrX:39561846-39561599 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 24, 72

Conread position: 603-842
Cow position: chrX:7552720-7552473 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 181
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 22, 71

Conread position: 603-842
Cow position: chrX:9094735-9094979 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 176
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 22, 71

Conread position: 603-842
Cow position: chrX:17665710-17665463 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 189
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 23, 71

Conread position: 605-841
Cow position: chrX:11458710-11458478 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 171
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 54, 0

Conread position: 611-778
Cow position: chrX:35283391-35283567 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 143
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 14, 108

Conread position: 612-794
Cow position: chrX:13180458-13180275 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 77, 47

Conread position: 612-813
Cow position: chrX:24110471-24110265 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 138, 57

Conread position: 612-840
Cow position: chrX:38590077-38589851 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 170, 47

Conread position: 613-842
Cow position: chrX:2145082-2145306 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 165
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 173, 35

Conread position: 614-764
Cow position: chrX:30168971-30168814 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 13, 150

Conread position: 614-840
Cow position: chrX:22126665-22126443 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 167, 59

Conread position: 614-842
Cow position: chrX:23388450-23388214 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 177
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 11, 60

Conread position: 614-842
Cow position: chrX:33536682-33536921 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 182
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 10, 47

Conread position: 625-842
Cow position: chrX:30229997-30229779 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 152, 46

Conread position: 625-842
Cow position: chrX:45417489-45417266 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 155
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 159, 23

Conread position: 626-818
Cow position: chrX:28559759-28559572 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 175, 44

Conread position: 626-840
Cow position: chrX:2381614-2381833 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 159, 42

Conread position: 628-773
Cow position: chrX:31511722-31511869 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 126
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 39, 0

Conread position: 628-782
Cow position: chrX:16022879-16023030 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 43, 0

Conread position: 628-836
Cow position: chrX:4906877-4906664 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 158
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 149, 43

Conread position: 628-839
Cow position: chrX:36838833-36839051 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 155, 99

Conread position: 628-840
Cow position: chrX:20651561-20651776 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 128, 40

Conread position: 628-840
Cow position: chrX:20799416-20799639 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 131, 28

Conread position: 628-840
Cow position: chrX:21000319-21000542 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 168
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 150, 28

Conread position: 628-842
Cow position: chrX:10867732-10867518 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 161, 45

Conread position: 628-842
Cow position: chrX:13416314-13416091 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 167
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 84, 40

Conread position: 628-842
Cow position: chrX:16701798-16702017 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 148, 43

Conread position: 628-842
Cow position: chrX:16710080-16710299 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 149, 43

Conread position: 628-842
Cow position: chrX:16781403-16781618 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 165
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 28, 60

Conread position: 628-842
Cow position: chrX:20725087-20725306 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 156, 43

Conread position: 628-842
Cow position: chrX:21267953-21267734 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 111, 43

Conread position: 628-842
Cow position: chrX:22590727-22590505 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 169
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 135, 30

Conread position: 628-842
Cow position: chrX:23279144-23279360 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 163, 43

Conread position: 628-842
Cow position: chrX:23394722-23394941 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 161, 43

Conread position: 628-842
Cow position: chrX:23453937-23453719 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 156, 29

Conread position: 628-842
Cow position: chrX:23573687-23573469 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 163
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 161, 42

Conread position: 628-842
Cow position: chrX:26443666-26443883 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 163
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 160, 29

Conread position: 628-842
Cow position: chrX:26623693-26623476 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 164
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 133, 43

Conread position: 628-842
Cow position: chrX:35938910-35938687 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 174
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 66, 39

Conread position: 628-842
Cow position: chrX:42008751-42008963 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 164
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 157, 35

Conread position: 630-839
Cow position: chrX:3142954-3143168 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 155, 38

Conread position: 630-842
Cow position: chrX:5295433-5295218 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 54, 17

Conread position: 630-842
Cow position: chrX:41886880-41886665 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 170
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 99, 34

Conread position: 631-782
Cow position: chrX:17476289-17476141 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 121
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 40, 0

Conread position: 631-789
Cow position: chrX:30181808-30181653 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 631-842
Cow position: chrX:2047211-2047425 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 164
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 152, 40

Conread position: 631-842
Cow position: chrX:8481572-8481784 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 153, 40

Conread position: 631-842
Cow position: chrX:10529667-10529454 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 158
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 152, 40

Conread position: 631-842
Cow position: chrX:12652371-12652158 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 161
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 154, 17

Conread position: 631-842
Cow position: chrX:15123040-15122829 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 49, 27

Conread position: 631-842
Cow position: chrX:28754220-28754004 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 161
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 158, 28

Conread position: 633-840
Cow position: chrX:19397896-19398107 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 150, 38

Conread position: 633-842
Cow position: chrX:6580063-6580277 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 151, 38

Conread position: 633-842
Cow position: chrX:7119611-7119825 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 164
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 150, 38

Conread position: 633-842
Cow position: chrX:13929611-13929397 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 152, 38

Conread position: 633-842
Cow position: chrX:14461437-14461651 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 150, 38

Conread position: 633-842
Cow position: chrX:18221538-18221752 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 144, 38

Conread position: 633-842
Cow position: chrX:20034283-20034073 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 152, 15

Conread position: 633-842
Cow position: chrX:29909303-29909092 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 19, 54

Conread position: 633-842
Cow position: chrX:29911457-29911667 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 150, 38

Conread position: 633-842
Cow position: chrX:30013116-30013328 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 163
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 152, 40

Conread position: 633-842
Cow position: chrX:30437026-30437240 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 165
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 150, 38

Conread position: 633-842
Cow position: chrX:34093708-34093494 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 166
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 150, 38

Conread position: 634-842
Cow position: chrX:34007906-34008118 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 121, 14

Conread position: 635-842
Cow position: chrX:20357879-20357667 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 164
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 149, 36

Conread position: 635-842
Cow position: chrX:41528680-41528472 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 142, 33

Conread position: 637-842
Cow position: chrX:43437780-43437571 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 160
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 148, 6

Conread position: 649-842
Cow position: chrX:30090885-30090684 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 31, 0

Conread position: 668-839
Cow position: chrX:4742896-4742713 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 680-842
Cow position: chrX:28648677-28648509 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 105, 40

Conread position: 716-842
Cow position: chrX:29046645-29046775 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 69, 0

Conread position: 731-842
Cow position: chrX:39565065-39564950 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 50, 0

Show alignments to all cow chromosomes.