Cow genome map


           Conread name:
           Thy1-THY010068C08
        

               Conread position:
               174-686
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 131
               

               Conread position:
               174-793
               

               Cow position:
               
               

               Alignm length:
               632
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 62
               

               Conread position:
               176-586
               

               Cow position:
               
               

               Alignm length:
               425
               

               Alignm identity:
               279
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               56, 90
               

               Conread position:
               177-407
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               58, 79
               

               Conread position:
               177-411
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               71, 47
               

               Conread position:
               177-451
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               21, 131
               

               Conread position:
               177-464
               

               Cow position:
               
               

               Alignm length:
               298
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               58, 12
               

               Conread position:
               177-476
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               38, 23
               

               Conread position:
               177-501
               

               Cow position:
               
               

               Alignm length:
               345
               

               Alignm identity:
               248
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               59, 114
               

               Conread position:
               177-574
               

               Cow position:
               
               

               Alignm length:
               403
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               323, 60
               

               Conread position:
               177-600
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 131
               

               Conread position:
               177-647
               

               Cow position:
               
               

               Alignm length:
               483
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 123
               

               Conread position:
               177-657
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               312
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               62, 133
               

               Conread position:
               177-680
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 409
               

               Conread position:
               177-693
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 131
               

               Conread position:
               177-744
               

               Cow position:
               
               

               Alignm length:
               600
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 95
               

               Conread position:
               177-762
               

               Cow position:
               
               

               Alignm length:
               608
               

               Alignm identity:
               413
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 21
               

               Conread position:
               177-767
               

               Cow position:
               
               

               Alignm length:
               616
               

               Alignm identity:
               413
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 317
               

               Conread position:
               177-767
               

               Cow position:
               
               

               Alignm length:
               615
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 133
               

               Conread position:
               177-767
               

               Cow position:
               
               

               Alignm length:
               596
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 57
               

               Conread position:
               177-767
               

               Cow position:
               
               

               Alignm length:
               597
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 55
               

               Conread position:
               177-767
               

               Cow position:
               
               

               Alignm length:
               607
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 134
               

               Conread position:
               177-767
               

               Cow position:
               
               

               Alignm length:
               608
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 135
               

               Conread position:
               177-769
               

               Cow position:
               
               

               Alignm length:
               607
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 125
               

               Conread position:
               177-772
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 57
               

               Conread position:
               177-772
               

               Cow position:
               
               

               Alignm length:
               625
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 131
               

               Conread position:
               177-772
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               335, 57
               

               Conread position:
               177-772
               

               Cow position:
               
               

               Alignm length:
               613
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 128
               

               Conread position:
               177-772
               

               Cow position:
               
               

               Alignm length:
               612
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 47
               

               Conread position:
               177-775
               

               Cow position:
               
               

               Alignm length:
               615
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 135
               

               Conread position:
               177-779
               

               Cow position:
               
               

               Alignm length:
               615
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 122
               

               Conread position:
               177-779
               

               Cow position:
               
               

               Alignm length:
               617
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 132
               

               Conread position:
               177-785
               

               Cow position:
               
               

               Alignm length:
               619
               

               Alignm identity:
               396
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               96, 23
               

               Conread position:
               177-791
               

               Cow position:
               
               

               Alignm length:
               634
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 399
               

               Conread position:
               177-793
               

               Cow position:
               
               

               Alignm length:
               633
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 87
               

               Conread position:
               177-793
               

               Cow position:
               
               

               Alignm length:
               626
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 59
               

               Conread position:
               177-793
               

               Cow position:
               
               

               Alignm length:
               626
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 20
               

               Conread position:
               177-793
               

               Cow position:
               
               

               Alignm length:
               633
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 135
               

               Conread position:
               177-793
               

               Cow position:
               
               

               Alignm length:
               633
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 5
               

               Conread position:
               178-588
               

               Cow position:
               
               

               Alignm length:
               424
               

               Alignm identity:
               281
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               61, 48
               

               Conread position:
               178-779
               

               Cow position:
               
               

               Alignm length:
               623
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 133
               

               Conread position:
               179-641
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 125
               

               Conread position:
               179-718
               

               Cow position:
               
               

               Alignm length:
               555
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 130
               

               Conread position:
               179-740
               

               Cow position:
               
               

               Alignm length:
               575
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 130
               

               Conread position:
               179-793
               

               Cow position:
               
               

               Alignm length:
               631
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 121
               

               Conread position:
               181-538
               

               Cow position:
               
               

               Alignm length:
               359
               

               Alignm identity:
               235
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               328, 33
               

               Conread position:
               181-604
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 244
               

               Conread position:
               181-630
               

               Cow position:
               
               

               Alignm length:
               465
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 83
               

               Conread position:
               181-730
               

               Cow position:
               
               

               Alignm length:
               562
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 118
               

               Conread position:
               181-767
               

               Cow position:
               
               

               Alignm length:
               602
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 100
               

               Conread position:
               181-787
               

               Cow position:
               
               

               Alignm length:
               628
               

               Alignm identity:
               406
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               51, 104
               

               Conread position:
               181-793
               

               Cow position:
               
               

               Alignm length:
               643
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 130
               

               Conread position:
               182-641
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 129
               

               Conread position:
               185-514
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               108, 16
               

               Conread position:
               185-543
               

               Cow position:
               
               

               Alignm length:
               359
               

               Alignm identity:
               243
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               185-746
               

               Cow position:
               
               

               Alignm length:
               573
               

               Alignm identity:
               356
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               67, 100
               

               Conread position:
               185-793
               

               Cow position:
               
               

               Alignm length:
               625
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 124
               

               Conread position:
               193-771
               

               Cow position:
               
               

               Alignm length:
               584
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               371, 45
               

               Conread position:
               196-787
               

               Cow position:
               
               

               Alignm length:
               613
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 28
               

               Conread position:
               206-779
               

               Cow position:
               
               

               Alignm length:
               589
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 27
               

               Conread position:
               231-793
               

               Cow position:
               
               

               Alignm length:
               569
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               283, 71
               

               Conread position:
               232-476
               

               Cow position:
               
               

               Alignm length:
               247
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               91, 45
               

               Conread position:
               232-640
               

               Cow position:
               
               

               Alignm length:
               412
               

               Alignm identity:
               278
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               287, 49
               

               Conread position:
               232-745
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 72
               

               Conread position:
               232-769
               

               Cow position:
               
               

               Alignm length:
               541
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               305, 64
               

               Conread position:
               237-509
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               197
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               238-789
               

               Cow position:
               
               

               Alignm length:
               566
               

               Alignm identity:
               365
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               27, 85
               

               Conread position:
               238-793
               

               Cow position:
               
               

               Alignm length:
               562
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               240, 64
               

               Conread position:
               262-613
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               249, 38
               

               Conread position:
               271-751
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               304
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               176, 39
               

               Conread position:
               304-769
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 79
               

               Conread position:
               308-793
               

               Cow position:
               
               

               Alignm length:
               492
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 14
               

               Conread position:
               315-793
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 162
               

               Conread position:
               323-776
               

               Cow position:
               
               

               Alignm length:
               463
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 419
               

               Conread position:
               339-793
               

               Cow position:
               
               

               Alignm length:
               464
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 110
               

               Conread position:
               348-688
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               234
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               163, 0
               

               Conread position:
               348-793
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 67
               

               Conread position:
               349-548
               

               Cow position:
               
               

               Alignm length:
               202
               

               Alignm identity:
               141
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               121, 128
               

               Conread position:
               349-602
               

               Cow position:
               
               

               Alignm length:
               257
               

               Alignm identity:
               186
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               162, 41
               

               Conread position:
               350-779
               

               Cow position:
               
               

               Alignm length:
               435
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 5
               

               Conread position:
               434-770
               

               Cow position:
               
               

               Alignm length:
               341
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               80, 25
               

               Conread position:
               544-747
               

               Cow position:
               
               

               Alignm length:
               207
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               20, 103
               

               Conread position:
               552-793
               

               Cow position:
               
               

               Alignm length:
               247
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               12, 155
               

               Conread position:
               568-779
               

               Cow position:
               
               

               Alignm length:
               219
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               61, 36
               
Show alignments to all cow chromosomes.