Cow genome map
| Conread name: | Thy1-THY010068C08 |
| Conread position: | 174-445 |
| Cow position: | chr13:43590281-43590006 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 61, 113 |
| Conread position: | 174-510 |
| Cow position: | chr13:11071559-11071891 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 36, 136 |
| Conread position: | 174-767 |
| Cow position: | chr13:32984392-32985000 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 580 |
| Conread position: | 174-793 |
| Cow position: | chr13:31611359-31611981 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 135 |
| Conread position: | 177-474 |
| Cow position: | chr13:31732941-31733245 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 217 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 57, 119 |
| Conread position: | 177-481 |
| Cow position: | chr13:37835377-37835673 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 56, 103 |
| Conread position: | 177-527 |
| Cow position: | chr13:12633493-12633160 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 245 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 202, 25 |
| Conread position: | 177-533 |
| Cow position: | chr13:30654431-30654795 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 119 |
| Conread position: | 177-535 |
| Cow position: | chr13:35758231-35757856 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 177-590 |
| Cow position: | chr13:15543489-15543070 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 125 |
| Conread position: | 177-684 |
| Cow position: | chr13:34041390-34041899 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 81 |
| Conread position: | 177-688 |
| Cow position: | chr13:14177895-14178407 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 136 |
| Conread position: | 177-752 |
| Cow position: | chr13:34938399-34937844 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 177-767 |
| Cow position: | chr13:47229052-47229655 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 135 |
| Conread position: | 177-767 |
| Cow position: | chr13:50110400-50109806 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 134 |
| Conread position: | 177-768 |
| Cow position: | chr13:46102267-46101685 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 12 |
| Conread position: | 177-769 |
| Cow position: | chr13:15450179-15450765 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 177-772 |
| Cow position: | chr13:16254436-16255031 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 134 |
| Conread position: | 177-774 |
| Cow position: | chr13:15923434-15924038 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 132 |
| Conread position: | 177-779 |
| Cow position: | chr13:3653371-3653984 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 135 |
| Conread position: | 177-789 |
| Cow position: | chr13:43982155-43982753 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 34 |
| Conread position: | 177-793 |
| Cow position: | chr13:1592206-1592830 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 123 |
| Conread position: | 177-793 |
| Cow position: | chr13:6667184-6667793 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 127 |
| Conread position: | 177-793 |
| Cow position: | chr13:13900816-13900191 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 123 |
| Conread position: | 177-793 |
| Cow position: | chr13:21839246-21839878 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 141 |
| Conread position: | 177-793 |
| Cow position: | chr13:32546338-32545703 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 153 |
| Conread position: | 177-793 |
| Cow position: | chr13:34324607-34325235 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 134 |
| Conread position: | 178-562 |
| Cow position: | chr13:17330814-17331206 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 135 |
| Conread position: | 179-526 |
| Cow position: | chr13:21697198-21696844 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 243 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 55, 130 |
| Conread position: | 179-709 |
| Cow position: | chr13:34424708-34424165 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 130 |
| Conread position: | 179-767 |
| Cow position: | chr13:60467273-60466679 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 119 |
| Conread position: | 179-785 |
| Cow position: | chr13:42217966-42218585 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 121 |
| Conread position: | 179-792 |
| Cow position: | chr13:2387862-2388490 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 123 |
| Conread position: | 179-793 |
| Cow position: | chr13:17309414-17308790 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 107 |
| Conread position: | 179-793 |
| Cow position: | chr13:49974610-49974004 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 55 |
| Conread position: | 179-793 |
| Cow position: | chr13:57024639-57024029 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 181-448 |
| Cow position: | chr13:14402153-14402426 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 52, 119 |
| Conread position: | 181-552 |
| Cow position: | chr13:11797775-11798145 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 54, 132 |
| Conread position: | 181-793 |
| Cow position: | chr13:30278557-30277947 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 19 |
| Conread position: | 185-793 |
| Cow position: | chr13:15519566-15520185 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 124 |
| Conread position: | 192-563 |
| Cow position: | chr13:34049676-34049292 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 10, 297 |
| Conread position: | 192-688 |
| Cow position: | chr13:6758901-6758409 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 326 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 5, 129 |
| Conread position: | 197-720 |
| Cow position: | chr13:25692599-25692090 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 432, 34 |
| Conread position: | 222-793 |
| Cow position: | chr13:20541158-20541709 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 65 |
| Conread position: | 231-717 |
| Cow position: | chr13:5625102-5625593 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 332 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 7, 299 |
| Conread position: | 232-507 |
| Cow position: | chr13:34153877-34154148 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 232-636 |
| Cow position: | chr13:52645991-52646396 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 68 |
| Conread position: | 237-410 |
| Cow position: | chr13:47861706-47861536 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 238-642 |
| Cow position: | chr13:28670386-28670786 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 47 |
| Conread position: | 238-712 |
| Cow position: | chr13:3056257-3056733 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 53 |
| Conread position: | 238-749 |
| Cow position: | chr13:60699781-60700291 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 66 |
| Conread position: | 238-793 |
| Cow position: | chr13:32736945-32737502 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 53 |
| Conread position: | 253-751 |
| Cow position: | chr13:47682380-47681888 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 315 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 95, 47 |
| Conread position: | 262-466 |
| Cow position: | chr13:25952948-25952750 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 282-788 |
| Cow position: | chr13:34030245-34029742 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 14 |
| Conread position: | 297-493 |
| Cow position: | chr13:35031945-35031750 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 313-696 |
| Cow position: | chr13:19441371-19440988 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 265 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 193, 76 |
| Conread position: | 326-793 |
| Cow position: | chr13:30239030-30238571 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 108 |
| Conread position: | 348-641 |
| Cow position: | chr13:677788-677494 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 122, 129 |
| Conread position: | 427-687 |
| Cow position: | chr13:21133064-21132807 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 47, 90 |
| Conread position: | 580-760 |
| Cow position: | chr13:28671682-28671860 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 51, 17 |
Show alignments to all cow chromosomes.