Cow genome map

Conread name: Thy1-THY010068C08

Conread position: 170-771
Cow position: chr15:4679090-4678525 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 402
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 123, 66

Conread position: 171-793
Cow position: chr15:31783969-31784591 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 143

Conread position: 174-760
Cow position: chr15:5207717-5207125 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 366
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 61, 135

Conread position: 174-789
Cow position: chr15:47772967-47772354 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 142

Conread position: 176-677
Cow position: chr15:51218424-51217918 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 25

Conread position: 176-793
Cow position: chr15:1238493-1237880 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 61

Conread position: 176-793
Cow position: chr15:8100294-8099679 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 124

Conread position: 177-413
Cow position: chr15:4927198-4926963 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 167
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 59, 84

Conread position: 177-479
Cow position: chr15:7982630-7982920 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 204
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 61, 0

Conread position: 177-490
Cow position: chr15:38981552-38981234 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 217
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 63, 125

Conread position: 177-507
Cow position: chr15:32712049-32711714 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 234
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 57, 134

Conread position: 177-507
Cow position: chr15:35736617-35736278 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 239
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 59, 138

Conread position: 177-513
Cow position: chr15:8409698-8409356 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 246
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 56, 104

Conread position: 177-579
Cow position: chr15:17148947-17148545 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 87

Conread position: 177-619
Cow position: chr15:51675541-51675099 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 143

Conread position: 177-662
Cow position: chr15:2017386-2016900 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 63

Conread position: 177-685
Cow position: chr15:35752494-35753009 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 122

Conread position: 177-690
Cow position: chr15:11626511-11625996 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 97

Conread position: 177-720
Cow position: chr15:8751228-8750687 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 73

Conread position: 177-764
Cow position: chr15:6067353-6067945 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 379
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 59, 129

Conread position: 177-767
Cow position: chr15:445439-444829 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 86

Conread position: 177-767
Cow position: chr15:3889716-3889106 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 46

Conread position: 177-767
Cow position: chr15:18267153-18267763 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 116

Conread position: 177-768
Cow position: chr15:524045-524634 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 24

Conread position: 177-769
Cow position: chr15:6155120-6155721 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 8

Conread position: 177-771
Cow position: chr15:499570-498967 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 380
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 50, 20

Conread position: 177-771
Cow position: chr15:7235072-7234492 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 381
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 132, 47

Conread position: 177-772
Cow position: chr15:580255-579664 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 70

Conread position: 177-772
Cow position: chr15:21664918-21665526 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 363

Conread position: 177-772
Cow position: chr15:50123109-50123723 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 317

Conread position: 177-775
Cow position: chr15:4922970-4922372 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 122

Conread position: 177-775
Cow position: chr15:31359696-31359103 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 21

Conread position: 177-779
Cow position: chr15:2077480-2076862 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 120

Conread position: 177-779
Cow position: chr15:18332003-18332615 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 136

Conread position: 177-779
Cow position: chr15:18577537-18576928 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 132

Conread position: 177-779
Cow position: chr15:19737233-19737838 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 78

Conread position: 177-786
Cow position: chr15:814749-815363 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 136

Conread position: 177-787
Cow position: chr15:5981174-5980569 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 122

Conread position: 177-789
Cow position: chr15:6079577-6078955 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 134

Conread position: 177-793
Cow position: chr15:8811199-8811820 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 136

Conread position: 177-793
Cow position: chr15:15346288-15346916 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 35

Conread position: 177-793
Cow position: chr15:24295910-24295298 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 335, 47

Conread position: 177-793
Cow position: chr15:35646852-35647463 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 61

Conread position: 178-398
Cow position: chr15:17684523-17684746 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 165
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 54, 135

Conread position: 178-495
Cow position: chr15:51611169-51610852 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 218
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 28, 118

Conread position: 178-536
Cow position: chr15:13391242-13391609 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 257
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 55, 83

Conread position: 178-663
Cow position: chr15:36668573-36668068 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 122

Conread position: 178-765
Cow position: chr15:13675320-13674740 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 88

Conread position: 178-793
Cow position: chr15:4672261-4671636 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 21

Conread position: 179-539
Cow position: chr15:22378727-22378360 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 250
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 54, 130

Conread position: 179-772
Cow position: chr15:4197285-4196681 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 130

Conread position: 179-779
Cow position: chr15:2646832-2647446 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 130

Conread position: 179-785
Cow position: chr15:20750213-20749593 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 44

Conread position: 179-793
Cow position: chr15:4141995-4142620 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 126

Conread position: 180-605
Cow position: chr15:28986218-28986644 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 292
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 50, 118

Conread position: 181-387
Cow position: chr15:2588632-2588844 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 53, 129

Conread position: 181-479
Cow position: chr15:16595650-16595347 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 208
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 55, 136

Conread position: 181-779
Cow position: chr15:44070749-44070137 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 131

Conread position: 182-530
Cow position: chr15:4823287-4822944 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 231
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 80, 56

Conread position: 183-405
Cow position: chr15:36392323-36392548 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 52, 126

Conread position: 184-565
Cow position: chr15:2901650-2902042 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 270
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 49, 142

Conread position: 185-484
Cow position: chr15:7892725-7893007 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 203
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 133, 53

Conread position: 185-566
Cow position: chr15:6485397-6485017 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 254
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 45, 27

Conread position: 186-789
Cow position: chr15:9430754-9430144 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 13

Conread position: 186-793
Cow position: chr15:9003315-9003921 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 43

Conread position: 187-769
Cow position: chr15:7545676-7545105 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 121

Conread position: 187-789
Cow position: chr15:9738573-9739164 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 77

Conread position: 190-403
Cow position: chr15:4950866-4950658 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 11, 17

Conread position: 191-624
Cow position: chr15:5952516-5952931 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 20

Conread position: 212-745
Cow position: chr15:6553052-6553575 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 16

Conread position: 213-506
Cow position: chr15:2013124-2012829 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 204
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 42, 16

Conread position: 231-792
Cow position: chr15:35834179-35833627 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 347
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 11, 65

Conread position: 231-793
Cow position: chr15:32719981-32720537 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 73

Conread position: 232-532
Cow position: chr15:21948491-21948784 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 206
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 278, 40

Conread position: 232-556
Cow position: chr15:6623969-6623657 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 223
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 127, 58

Conread position: 232-688
Cow position: chr15:6478904-6478470 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 298
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 311, 38

Conread position: 232-769
Cow position: chr15:4962398-4961868 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 67

Conread position: 232-769
Cow position: chr15:7838023-7837471 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 487

Conread position: 232-769
Cow position: chr15:36625508-36626046 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 55

Conread position: 232-771
Cow position: chr15:7965186-7965737 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 81

Conread position: 232-792
Cow position: chr15:17217498-17218060 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 59

Conread position: 232-793
Cow position: chr15:3260558-3261131 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 70

Conread position: 237-466
Cow position: chr15:6386585-6386812 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 67, 0

Conread position: 238-654
Cow position: chr15:21450434-21450002 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 199

Conread position: 238-760
Cow position: chr15:9913452-9912920 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 66

Conread position: 238-772
Cow position: chr15:28489389-28489929 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 26

Conread position: 261-793
Cow position: chr15:1657995-1658525 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 43

Conread position: 261-793
Cow position: chr15:1668447-1667909 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 363
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 280, 43

Conread position: 262-475
Cow position: chr15:53409646-53409437 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 62, 17

Conread position: 262-767
Cow position: chr15:17079469-17079979 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 40

Conread position: 263-793
Cow position: chr15:4813330-4812798 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 40

Conread position: 279-775
Cow position: chr15:53136506-53137004 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 24

Conread position: 281-779
Cow position: chr15:20356208-20356701 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 15

Conread position: 286-789
Cow position: chr15:8057997-8057500 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 103

Conread position: 296-793
Cow position: chr15:10889310-10888815 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 16

Conread position: 301-539
Cow position: chr15:43757273-43757035 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 169, 24

Conread position: 303-775
Cow position: chr15:32493694-32494168 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 172

Conread position: 304-720
Cow position: chr15:7261303-7260871 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 280
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 81, 288

Conread position: 304-772
Cow position: chr15:2763352-2762898 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 314
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 193, 66

Conread position: 314-793
Cow position: chr15:315177-315657 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 151

Conread position: 314-793
Cow position: chr15:44829483-44828998 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 396

Conread position: 325-793
Cow position: chr15:1518483-1518952 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 152

Conread position: 417-793
Cow position: chr15:40106419-40106062 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 261
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 126, 64

Conread position: 425-793
Cow position: chr15:37393063-37392693 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 24

Conread position: 448-761
Cow position: chr15:24717634-24717319 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 9

Conread position: 457-793
Cow position: chr15:19818505-19818164 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 234
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 87, 46

Show alignments to all cow chromosomes.