Cow genome map
Conread name: | Thy1-THY010068C08 |
Conread position: | 1-180 |
Cow position: | chr16:5633484-5633308 (view UCSC Genome Browser custom track) |
Alignm length: | 181 |
Alignm identity: | 128 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 74, 99 |
Conread position: | 5-172 |
Cow position: | chr16:52589879-52589712 (view UCSC Genome Browser custom track) |
Alignm length: | 170 |
Alignm identity: | 132 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 24, 12 |
Conread position: | 174-467 |
Cow position: | chr16:46628409-46628120 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 192 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 52, 117 |
Conread position: | 176-593 |
Cow position: | chr16:42185011-42185430 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 288 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 20, 84 |
Conread position: | 176-720 |
Cow position: | chr16:18497816-18498363 (view UCSC Genome Browser custom track) |
Alignm length: | 555 |
Alignm identity: | 377 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 131, 40 |
Conread position: | 176-720 |
Cow position: | chr16:51084634-51084069 (view UCSC Genome Browser custom track) |
Alignm length: | 568 |
Alignm identity: | 365 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 539 |
Conread position: | 177-379 |
Cow position: | chr16:3330419-3330210 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 149 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 58, 135 |
Conread position: | 177-463 |
Cow position: | chr16:837798-837502 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 207 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 59, 26 |
Conread position: | 177-463 |
Cow position: | chr16:15567737-15567444 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 205 |
Alignm E-value: | 8e-38 |
Alignm gaps (pig, cow): | 59, 135 |
Conread position: | 177-482 |
Cow position: | chr16:19151135-19151453 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 227 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 59, 113 |
Conread position: | 177-484 |
Cow position: | chr16:26105579-26105892 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 221 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 60, 98 |
Conread position: | 177-566 |
Cow position: | chr16:1860697-1860306 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 131 |
Conread position: | 177-567 |
Cow position: | chr16:49279914-49279528 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 256 |
Alignm E-value: | 8e-27 |
Alignm gaps (pig, cow): | 59, 92 |
Conread position: | 177-584 |
Cow position: | chr16:37481938-37482328 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 255 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 333, 58 |
Conread position: | 177-642 |
Cow position: | chr16:37480659-37481120 (view UCSC Genome Browser custom track) |
Alignm length: | 477 |
Alignm identity: | 324 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 130 |
Conread position: | 177-693 |
Cow position: | chr16:15185553-15185031 (view UCSC Genome Browser custom track) |
Alignm length: | 532 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 135 |
Conread position: | 177-768 |
Cow position: | chr16:41162591-41163189 (view UCSC Genome Browser custom track) |
Alignm length: | 608 |
Alignm identity: | 413 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 47 |
Conread position: | 177-769 |
Cow position: | chr16:1566974-1567573 (view UCSC Genome Browser custom track) |
Alignm length: | 605 |
Alignm identity: | 426 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 132 |
Conread position: | 177-769 |
Cow position: | chr16:2410487-2411087 (view UCSC Genome Browser custom track) |
Alignm length: | 604 |
Alignm identity: | 422 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 116 |
Conread position: | 177-772 |
Cow position: | chr16:5662310-5661720 (view UCSC Genome Browser custom track) |
Alignm length: | 604 |
Alignm identity: | 417 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 138, 49 |
Conread position: | 177-779 |
Cow position: | chr16:406559-407164 (view UCSC Genome Browser custom track) |
Alignm length: | 617 |
Alignm identity: | 434 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 22 |
Conread position: | 177-779 |
Cow position: | chr16:14665328-14665942 (view UCSC Genome Browser custom track) |
Alignm length: | 620 |
Alignm identity: | 441 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 121 |
Conread position: | 177-779 |
Cow position: | chr16:15477324-15476710 (view UCSC Genome Browser custom track) |
Alignm length: | 621 |
Alignm identity: | 432 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 136 |
Conread position: | 177-779 |
Cow position: | chr16:23535409-23536020 (view UCSC Genome Browser custom track) |
Alignm length: | 618 |
Alignm identity: | 436 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 135 |
Conread position: | 177-779 |
Cow position: | chr16:26664234-26663619 (view UCSC Genome Browser custom track) |
Alignm length: | 619 |
Alignm identity: | 432 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 123 |
Conread position: | 177-788 |
Cow position: | chr16:10438733-10438098 (view UCSC Genome Browser custom track) |
Alignm length: | 642 |
Alignm identity: | 444 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 130 |
Conread position: | 177-793 |
Cow position: | chr16:2482658-2483284 (view UCSC Genome Browser custom track) |
Alignm length: | 635 |
Alignm identity: | 446 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 21 |
Conread position: | 177-793 |
Cow position: | chr16:4478489-4479127 (view UCSC Genome Browser custom track) |
Alignm length: | 641 |
Alignm identity: | 441 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 549 |
Conread position: | 177-793 |
Cow position: | chr16:23983777-23983165 (view UCSC Genome Browser custom track) |
Alignm length: | 630 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 123 |
Conread position: | 177-793 |
Cow position: | chr16:25342439-25341814 (view UCSC Genome Browser custom track) |
Alignm length: | 635 |
Alignm identity: | 446 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 335, 58 |
Conread position: | 177-793 |
Cow position: | chr16:25442109-25441483 (view UCSC Genome Browser custom track) |
Alignm length: | 631 |
Alignm identity: | 447 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 120 |
Conread position: | 177-793 |
Cow position: | chr16:25456996-25457608 (view UCSC Genome Browser custom track) |
Alignm length: | 625 |
Alignm identity: | 443 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 238, 19 |
Conread position: | 177-793 |
Cow position: | chr16:28470619-28471246 (view UCSC Genome Browser custom track) |
Alignm length: | 633 |
Alignm identity: | 441 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 136 |
Conread position: | 177-793 |
Cow position: | chr16:29047504-29046878 (view UCSC Genome Browser custom track) |
Alignm length: | 640 |
Alignm identity: | 440 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 134 |
Conread position: | 177-793 |
Cow position: | chr16:40295693-40296321 (view UCSC Genome Browser custom track) |
Alignm length: | 634 |
Alignm identity: | 450 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 135 |
Conread position: | 178-498 |
Cow position: | chr16:3088725-3089048 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 221 |
Alignm E-value: | 6e-35 |
Alignm gaps (pig, cow): | 21, 129 |
Conread position: | 178-767 |
Cow position: | chr16:10375119-10375717 (view UCSC Genome Browser custom track) |
Alignm length: | 605 |
Alignm identity: | 408 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 133 |
Conread position: | 178-772 |
Cow position: | chr16:25086097-25085496 (view UCSC Genome Browser custom track) |
Alignm length: | 615 |
Alignm identity: | 423 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 113 |
Conread position: | 178-772 |
Cow position: | chr16:29034544-29033930 (view UCSC Genome Browser custom track) |
Alignm length: | 622 |
Alignm identity: | 426 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 323 |
Conread position: | 178-793 |
Cow position: | chr16:31591436-31592057 (view UCSC Genome Browser custom track) |
Alignm length: | 632 |
Alignm identity: | 434 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 121 |
Conread position: | 179-533 |
Cow position: | chr16:27593986-27593625 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 240 |
Alignm E-value: | 5e-33 |
Alignm gaps (pig, cow): | 42, 117 |
Conread position: | 179-699 |
Cow position: | chr16:25189127-25188596 (view UCSC Genome Browser custom track) |
Alignm length: | 536 |
Alignm identity: | 365 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 129 |
Conread position: | 179-793 |
Cow position: | chr16:21186094-21185473 (view UCSC Genome Browser custom track) |
Alignm length: | 632 |
Alignm identity: | 424 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 130 |
Conread position: | 181-491 |
Cow position: | chr16:26978617-26978300 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 217 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 54, 139 |
Conread position: | 181-652 |
Cow position: | chr16:23251960-23252437 (view UCSC Genome Browser custom track) |
Alignm length: | 485 |
Alignm identity: | 338 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 128 |
Conread position: | 181-789 |
Cow position: | chr16:1432668-1432050 (view UCSC Genome Browser custom track) |
Alignm length: | 630 |
Alignm identity: | 437 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 16 |
Conread position: | 181-793 |
Cow position: | chr16:8815627-8816249 (view UCSC Genome Browser custom track) |
Alignm length: | 629 |
Alignm identity: | 446 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 118 |
Conread position: | 182-510 |
Cow position: | chr16:27714335-27714652 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 225 |
Alignm E-value: | 7e-36 |
Alignm gaps (pig, cow): | 57, 27 |
Conread position: | 182-663 |
Cow position: | chr16:12668297-12668772 (view UCSC Genome Browser custom track) |
Alignm length: | 487 |
Alignm identity: | 324 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 57 |
Conread position: | 184-728 |
Cow position: | chr16:44867040-44867573 (view UCSC Genome Browser custom track) |
Alignm length: | 557 |
Alignm identity: | 343 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 37, 79 |
Conread position: | 185-509 |
Cow position: | chr16:10565298-10565617 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 235 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 293, 41 |
Conread position: | 190-793 |
Cow position: | chr16:25081255-25080672 (view UCSC Genome Browser custom track) |
Alignm length: | 610 |
Alignm identity: | 389 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 319, 57 |
Conread position: | 191-647 |
Cow position: | chr16:51405494-51405933 (view UCSC Genome Browser custom track) |
Alignm length: | 460 |
Alignm identity: | 308 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 103 |
Conread position: | 199-662 |
Cow position: | chr16:25739115-25738674 (view UCSC Genome Browser custom track) |
Alignm length: | 467 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 13 |
Conread position: | 201-662 |
Cow position: | chr16:16270690-16271152 (view UCSC Genome Browser custom track) |
Alignm length: | 468 |
Alignm identity: | 327 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 105 |
Conread position: | 206-793 |
Cow position: | chr16:34530769-34530178 (view UCSC Genome Browser custom track) |
Alignm length: | 605 |
Alignm identity: | 403 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 87 |
Conread position: | 231-788 |
Cow position: | chr16:12537508-12538063 (view UCSC Genome Browser custom track) |
Alignm length: | 564 |
Alignm identity: | 400 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 281, 72 |
Conread position: | 232-425 |
Cow position: | chr16:49234214-49234403 (view UCSC Genome Browser custom track) |
Alignm length: | 194 |
Alignm identity: | 141 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 71, 0 |
Conread position: | 232-652 |
Cow position: | chr16:15493921-15493500 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 280, 70 |
Conread position: | 232-792 |
Cow position: | chr16:37455602-37456169 (view UCSC Genome Browser custom track) |
Alignm length: | 581 |
Alignm identity: | 382 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 287, 71 |
Conread position: | 237-771 |
Cow position: | chr16:25171760-25171229 (view UCSC Genome Browser custom track) |
Alignm length: | 541 |
Alignm identity: | 359 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 104, 63 |
Conread position: | 238-476 |
Cow position: | chr16:41570700-41570456 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 174 |
Alignm E-value: | 9e-28 |
Alignm gaps (pig, cow): | 17, 11 |
Conread position: | 238-476 |
Cow position: | chr16:41755049-41755281 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 172 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 141, 61 |
Conread position: | 238-494 |
Cow position: | chr16:56916656-56916906 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 181 |
Alignm E-value: | 7e-36 |
Alignm gaps (pig, cow): | 48, 0 |
Conread position: | 238-793 |
Cow position: | chr16:28169948-28170516 (view UCSC Genome Browser custom track) |
Alignm length: | 571 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 247 |
Conread position: | 240-573 |
Cow position: | chr16:23801712-23802035 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 238 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 249, 20 |
Conread position: | 242-501 |
Cow position: | chr16:52888312-52888061 (view UCSC Genome Browser custom track) |
Alignm length: | 260 |
Alignm identity: | 173 |
Alignm E-value: | 7e-26 |
Alignm gaps (pig, cow): | 27, 0 |
Conread position: | 276-780 |
Cow position: | chr16:20133719-20134217 (view UCSC Genome Browser custom track) |
Alignm length: | 517 |
Alignm identity: | 325 |
Alignm E-value: | 8e-27 |
Alignm gaps (pig, cow): | 82, 11 |
Conread position: | 276-789 |
Cow position: | chr16:33923788-33924289 (view UCSC Genome Browser custom track) |
Alignm length: | 520 |
Alignm identity: | 330 |
Alignm E-value: | 8e-38 |
Alignm gaps (pig, cow): | 209, 32 |
Conread position: | 279-793 |
Cow position: | chr16:2726918-2727431 (view UCSC Genome Browser custom track) |
Alignm length: | 521 |
Alignm identity: | 364 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 235, 14 |
Conread position: | 281-579 |
Cow position: | chr16:54697082-54696781 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 207 |
Alignm E-value: | 4e-30 |
Alignm gaps (pig, cow): | 158, 7 |
Conread position: | 295-793 |
Cow position: | chr16:45798917-45798425 (view UCSC Genome Browser custom track) |
Alignm length: | 504 |
Alignm identity: | 363 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 217, 27 |
Conread position: | 296-793 |
Cow position: | chr16:25258309-25257792 (view UCSC Genome Browser custom track) |
Alignm length: | 520 |
Alignm identity: | 361 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 27 |
Conread position: | 303-667 |
Cow position: | chr16:46707017-46707385 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 167, 22 |
Conread position: | 306-776 |
Cow position: | chr16:46500558-46500088 (view UCSC Genome Browser custom track) |
Alignm length: | 481 |
Alignm identity: | 306 |
Alignm E-value: | 6e-35 |
Alignm gaps (pig, cow): | 107, 17 |
Conread position: | 316-793 |
Cow position: | chr16:11283648-11283165 (view UCSC Genome Browser custom track) |
Alignm length: | 486 |
Alignm identity: | 336 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 164 |
Conread position: | 320-771 |
Cow position: | chr16:28437058-28437507 (view UCSC Genome Browser custom track) |
Alignm length: | 458 |
Alignm identity: | 311 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 162, 193 |
Conread position: | 329-715 |
Cow position: | chr16:25255786-25255399 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 186, 60 |
Conread position: | 350-775 |
Cow position: | chr16:41166467-41166897 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 310 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 164, 359 |
Conread position: | 373-770 |
Cow position: | chr16:30049766-30049363 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 301 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 132, 20 |
Conread position: | 395-793 |
Cow position: | chr16:52591850-52592242 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 80 |
Conread position: | 427-775 |
Cow position: | chr16:10203225-10203565 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 245 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 92, 61 |
Conread position: | 469-780 |
Cow position: | chr16:837234-836911 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 221 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 20, 106 |
Conread position: | 579-771 |
Cow position: | chr16:20752958-20753155 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 141 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 42, 130 |
Show alignments to all cow chromosomes.