Cow genome map

Conread name: Thy1-THY010068C08

Conread position: 1-180
Cow position: chr16:5633484-5633308 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 128
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 74, 99

Conread position: 5-172
Cow position: chr16:52589879-52589712 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 24, 12

Conread position: 174-467
Cow position: chr16:46628409-46628120 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 192
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 52, 117

Conread position: 176-593
Cow position: chr16:42185011-42185430 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 288
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 20, 84

Conread position: 176-720
Cow position: chr16:18497816-18498363 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 40

Conread position: 176-720
Cow position: chr16:51084634-51084069 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 539

Conread position: 177-379
Cow position: chr16:3330419-3330210 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 58, 135

Conread position: 177-463
Cow position: chr16:837798-837502 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 207
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 59, 26

Conread position: 177-463
Cow position: chr16:15567737-15567444 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 205
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 59, 135

Conread position: 177-482
Cow position: chr16:19151135-19151453 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 227
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 59, 113

Conread position: 177-484
Cow position: chr16:26105579-26105892 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 221
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 60, 98

Conread position: 177-566
Cow position: chr16:1860697-1860306 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 131

Conread position: 177-567
Cow position: chr16:49279914-49279528 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 256
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 59, 92

Conread position: 177-584
Cow position: chr16:37481938-37482328 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 255
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 333, 58

Conread position: 177-642
Cow position: chr16:37480659-37481120 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 130

Conread position: 177-693
Cow position: chr16:15185553-15185031 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 135

Conread position: 177-768
Cow position: chr16:41162591-41163189 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 47

Conread position: 177-769
Cow position: chr16:1566974-1567573 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 132

Conread position: 177-769
Cow position: chr16:2410487-2411087 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 116

Conread position: 177-772
Cow position: chr16:5662310-5661720 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 49

Conread position: 177-779
Cow position: chr16:406559-407164 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 22

Conread position: 177-779
Cow position: chr16:14665328-14665942 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 121

Conread position: 177-779
Cow position: chr16:15477324-15476710 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 136

Conread position: 177-779
Cow position: chr16:23535409-23536020 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 135

Conread position: 177-779
Cow position: chr16:26664234-26663619 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 123

Conread position: 177-788
Cow position: chr16:10438733-10438098 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 130

Conread position: 177-793
Cow position: chr16:2482658-2483284 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 21

Conread position: 177-793
Cow position: chr16:4478489-4479127 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 549

Conread position: 177-793
Cow position: chr16:23983777-23983165 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 123

Conread position: 177-793
Cow position: chr16:25342439-25341814 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 335, 58

Conread position: 177-793
Cow position: chr16:25442109-25441483 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 120

Conread position: 177-793
Cow position: chr16:25456996-25457608 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 19

Conread position: 177-793
Cow position: chr16:28470619-28471246 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 136

Conread position: 177-793
Cow position: chr16:29047504-29046878 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 134

Conread position: 177-793
Cow position: chr16:40295693-40296321 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 135

Conread position: 178-498
Cow position: chr16:3088725-3089048 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 221
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 21, 129

Conread position: 178-767
Cow position: chr16:10375119-10375717 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 133

Conread position: 178-772
Cow position: chr16:25086097-25085496 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 113

Conread position: 178-772
Cow position: chr16:29034544-29033930 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 323

Conread position: 178-793
Cow position: chr16:31591436-31592057 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 121

Conread position: 179-533
Cow position: chr16:27593986-27593625 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 240
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 42, 117

Conread position: 179-699
Cow position: chr16:25189127-25188596 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 129

Conread position: 179-793
Cow position: chr16:21186094-21185473 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 130

Conread position: 181-491
Cow position: chr16:26978617-26978300 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 217
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 54, 139

Conread position: 181-652
Cow position: chr16:23251960-23252437 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 128

Conread position: 181-789
Cow position: chr16:1432668-1432050 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 16

Conread position: 181-793
Cow position: chr16:8815627-8816249 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 118

Conread position: 182-510
Cow position: chr16:27714335-27714652 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 225
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 57, 27

Conread position: 182-663
Cow position: chr16:12668297-12668772 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 57

Conread position: 184-728
Cow position: chr16:44867040-44867573 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 343
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 37, 79

Conread position: 185-509
Cow position: chr16:10565298-10565617 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 41

Conread position: 190-793
Cow position: chr16:25081255-25080672 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 389
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 319, 57

Conread position: 191-647
Cow position: chr16:51405494-51405933 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 103

Conread position: 199-662
Cow position: chr16:25739115-25738674 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 13

Conread position: 201-662
Cow position: chr16:16270690-16271152 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 105

Conread position: 206-793
Cow position: chr16:34530769-34530178 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 87

Conread position: 231-788
Cow position: chr16:12537508-12538063 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 72

Conread position: 232-425
Cow position: chr16:49234214-49234403 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 71, 0

Conread position: 232-652
Cow position: chr16:15493921-15493500 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 70

Conread position: 232-792
Cow position: chr16:37455602-37456169 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 71

Conread position: 237-771
Cow position: chr16:25171760-25171229 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 63

Conread position: 238-476
Cow position: chr16:41570700-41570456 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 174
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 17, 11

Conread position: 238-476
Cow position: chr16:41755049-41755281 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 141, 61

Conread position: 238-494
Cow position: chr16:56916656-56916906 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 181
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 48, 0

Conread position: 238-793
Cow position: chr16:28169948-28170516 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 247

Conread position: 240-573
Cow position: chr16:23801712-23802035 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 238
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 249, 20

Conread position: 242-501
Cow position: chr16:52888312-52888061 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 173
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 27, 0

Conread position: 276-780
Cow position: chr16:20133719-20134217 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 325
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 82, 11

Conread position: 276-789
Cow position: chr16:33923788-33924289 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 330
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 209, 32

Conread position: 279-793
Cow position: chr16:2726918-2727431 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 14

Conread position: 281-579
Cow position: chr16:54697082-54696781 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 207
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 158, 7

Conread position: 295-793
Cow position: chr16:45798917-45798425 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 27

Conread position: 296-793
Cow position: chr16:25258309-25257792 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 27

Conread position: 303-667
Cow position: chr16:46707017-46707385 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 22

Conread position: 306-776
Cow position: chr16:46500558-46500088 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 306
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 107, 17

Conread position: 316-793
Cow position: chr16:11283648-11283165 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 164

Conread position: 320-771
Cow position: chr16:28437058-28437507 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 193

Conread position: 329-715
Cow position: chr16:25255786-25255399 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 60

Conread position: 350-775
Cow position: chr16:41166467-41166897 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 359

Conread position: 373-770
Cow position: chr16:30049766-30049363 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 20

Conread position: 395-793
Cow position: chr16:52591850-52592242 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 80

Conread position: 427-775
Cow position: chr16:10203225-10203565 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 245
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 92, 61

Conread position: 469-780
Cow position: chr16:837234-836911 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 221
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 20, 106

Conread position: 579-771
Cow position: chr16:20752958-20753155 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 141
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 42, 130

Show alignments to all cow chromosomes.