Cow genome map
| Conread name: | Thy1-THY010068C08 |
| Conread position: | 170-616 |
| Cow position: | chr17:13990292-13990738 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 309 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 65, 105 |
| Conread position: | 170-770 |
| Cow position: | chr17:18194866-18194278 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 121 |
| Conread position: | 174-767 |
| Cow position: | chr17:2247032-2247614 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 25 |
| Conread position: | 176-537 |
| Cow position: | chr17:16121500-16121833 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 30, 55 |
| Conread position: | 177-422 |
| Cow position: | chr17:22133251-22133003 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 141, 181 |
| Conread position: | 177-475 |
| Cow position: | chr17:7942015-7942309 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 19, 55 |
| Conread position: | 177-490 |
| Cow position: | chr17:15372280-15371960 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 225 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 58, 118 |
| Conread position: | 177-500 |
| Cow position: | chr17:6611435-6611764 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 56, 132 |
| Conread position: | 177-501 |
| Cow position: | chr17:239390-239067 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 41, 65 |
| Conread position: | 177-555 |
| Cow position: | chr17:14240552-14240167 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 47 |
| Conread position: | 177-574 |
| Cow position: | chr17:36945-36548 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 49, 135 |
| Conread position: | 177-611 |
| Cow position: | chr17:22559022-22558597 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 132 |
| Conread position: | 177-767 |
| Cow position: | chr17:6120768-6120165 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 134 |
| Conread position: | 177-767 |
| Cow position: | chr17:15436834-15436245 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 57 |
| Conread position: | 177-768 |
| Cow position: | chr17:19267774-19268378 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 136 |
| Conread position: | 177-769 |
| Cow position: | chr17:4061150-4060557 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 135 |
| Conread position: | 177-769 |
| Cow position: | chr17:5227677-5227074 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 43 |
| Conread position: | 177-769 |
| Cow position: | chr17:20080819-20081405 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 28 |
| Conread position: | 177-769 |
| Cow position: | chr17:20403484-20402878 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 46 |
| Conread position: | 177-769 |
| Cow position: | chr17:24028950-24029551 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 135 |
| Conread position: | 177-771 |
| Cow position: | chr17:3707726-3708328 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 65 |
| Conread position: | 177-772 |
| Cow position: | chr17:23323400-23324005 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 59 |
| Conread position: | 177-772 |
| Cow position: | chr17:34157172-34156577 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 134 |
| Conread position: | 177-772 |
| Cow position: | chr17:43989554-43988949 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 135 |
| Conread position: | 177-774 |
| Cow position: | chr17:1881154-1880549 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 137 |
| Conread position: | 177-775 |
| Cow position: | chr17:40805860-40805262 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 62 |
| Conread position: | 177-779 |
| Cow position: | chr17:2263160-2262542 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 108 |
| Conread position: | 177-793 |
| Cow position: | chr17:6260913-6260277 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 177-793 |
| Cow position: | chr17:11086674-11087292 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 129 |
| Conread position: | 177-793 |
| Cow position: | chr17:14215975-14216605 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 134 |
| Conread position: | 177-793 |
| Cow position: | chr17:14895225-14894588 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 22 |
| Conread position: | 177-793 |
| Cow position: | chr17:15324882-15324256 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 131 |
| Conread position: | 177-793 |
| Cow position: | chr17:16856466-16857091 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 135 |
| Conread position: | 177-793 |
| Cow position: | chr17:20086712-20087313 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 59 |
| Conread position: | 178-401 |
| Cow position: | chr17:21418624-21418404 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 38, 56 |
| Conread position: | 178-549 |
| Cow position: | chr17:1703644-1704018 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 50, 45 |
| Conread position: | 178-583 |
| Cow position: | chr17:31533261-31532867 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 48, 26 |
| Conread position: | 178-762 |
| Cow position: | chr17:24783213-24782618 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 132 |
| Conread position: | 178-772 |
| Cow position: | chr17:15142304-15142918 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 65 |
| Conread position: | 179-711 |
| Cow position: | chr17:1786889-1787413 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 133 |
| Conread position: | 179-745 |
| Cow position: | chr17:3655243-3655819 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 130 |
| Conread position: | 179-793 |
| Cow position: | chr17:31766989-31767611 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 130 |
| Conread position: | 201-772 |
| Cow position: | chr17:8210134-8209556 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 102 |
| Conread position: | 205-486 |
| Cow position: | chr17:2091784-2092064 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 20, 45 |
| Conread position: | 232-749 |
| Cow position: | chr17:13705534-13705030 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 70 |
| Conread position: | 232-769 |
| Cow position: | chr17:2580611-2580074 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 71 |
| Conread position: | 232-769 |
| Cow position: | chr17:20099483-20100022 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 30 |
| Conread position: | 232-772 |
| Cow position: | chr17:20488929-20488398 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 58 |
| Conread position: | 232-793 |
| Cow position: | chr17:4083002-4082482 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 375 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 304, 15 |
| Conread position: | 236-473 |
| Cow position: | chr17:11689443-11689194 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 237-576 |
| Cow position: | chr17:54464-54807 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 84, 32 |
| Conread position: | 238-761 |
| Cow position: | chr17:1656866-1657389 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 64 |
| Conread position: | 238-793 |
| Cow position: | chr17:3641850-3642400 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 65 |
| Conread position: | 238-793 |
| Cow position: | chr17:11783823-11783275 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 53 |
| Conread position: | 238-793 |
| Cow position: | chr17:19020556-19020002 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 77 |
| Conread position: | 239-671 |
| Cow position: | chr17:2031107-2030671 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 61 |
| Conread position: | 241-784 |
| Cow position: | chr17:14910491-14911028 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 348 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 140, 31 |
| Conread position: | 242-770 |
| Cow position: | chr17:16899332-16899840 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 352 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 295, 27 |
| Conread position: | 257-793 |
| Cow position: | chr17:38874596-38874048 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 47 |
| Conread position: | 263-549 |
| Cow position: | chr17:150937-151224 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 41 |
| Conread position: | 270-658 |
| Cow position: | chr17:42265912-42265531 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 277 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 226, 32 |
| Conread position: | 272-599 |
| Cow position: | chr17:9813446-9813116 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 233, 31 |
| Conread position: | 305-793 |
| Cow position: | chr17:15156052-15156538 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 9 |
| Conread position: | 315-793 |
| Cow position: | chr17:227403-227880 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 45 |
| Conread position: | 325-783 |
| Cow position: | chr17:43114234-43114686 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 286 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 145, 106 |
| Conread position: | 468-764 |
| Cow position: | chr17:21417767-21417467 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 31 |
| Conread position: | 520-784 |
| Cow position: | chr17:2092062-2092319 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 92, 24 |
| Conread position: | 532-793 |
| Cow position: | chr17:18299703-18299966 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 15, 122 |
| Conread position: | 578-771 |
| Cow position: | chr17:151229-151421 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 54, 128 |
| Conread position: | 633-793 |
| Cow position: | chr17:11026211-11026369 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 73 |
Show alignments to all cow chromosomes.