Cow genome map
| Conread name: | Thy1-THY010068C08 |
| Conread position: | 171-793 |
| Cow position: | chr18:54271750-54271141 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 66 |
| Conread position: | 174-564 |
| Cow position: | chr18:15850685-15850310 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 7, 13 |
| Conread position: | 174-788 |
| Cow position: | chr18:41839547-41840166 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 115 |
| Conread position: | 175-775 |
| Cow position: | chr18:16089400-16088801 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 5 |
| Conread position: | 176-793 |
| Cow position: | chr18:40479657-40479025 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 136 |
| Conread position: | 177-421 |
| Cow position: | chr18:56013840-56013588 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 59, 44 |
| Conread position: | 177-522 |
| Cow position: | chr18:38343030-38343370 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 261, 35 |
| Conread position: | 177-543 |
| Cow position: | chr18:54004909-54005281 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 57, 135 |
| Conread position: | 177-647 |
| Cow position: | chr18:51482132-51481670 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 47 |
| Conread position: | 177-671 |
| Cow position: | chr18:36255662-36256139 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 59 |
| Conread position: | 177-693 |
| Cow position: | chr18:37507220-37506697 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 125 |
| Conread position: | 177-767 |
| Cow position: | chr18:11273854-11274444 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 57 |
| Conread position: | 177-767 |
| Cow position: | chr18:16079933-16079333 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 134 |
| Conread position: | 177-767 |
| Cow position: | chr18:29074250-29073673 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 389 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 56, 82 |
| Conread position: | 177-767 |
| Cow position: | chr18:51342949-51342348 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 134 |
| Conread position: | 177-775 |
| Cow position: | chr18:14131656-14131051 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 123 |
| Conread position: | 177-775 |
| Cow position: | chr18:16175356-16175962 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 132 |
| Conread position: | 177-775 |
| Cow position: | chr18:52652172-52651571 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 135 |
| Conread position: | 177-779 |
| Cow position: | chr18:40081148-40081741 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 384 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 49, 142 |
| Conread position: | 177-779 |
| Cow position: | chr18:51274784-51275385 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 23 |
| Conread position: | 177-783 |
| Cow position: | chr18:16869675-16869052 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 112 |
| Conread position: | 177-793 |
| Cow position: | chr18:14417242-14416621 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 125 |
| Conread position: | 177-793 |
| Cow position: | chr18:36509605-36508975 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 135 |
| Conread position: | 178-438 |
| Cow position: | chr18:44402962-44402698 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 58, 133 |
| Conread position: | 178-772 |
| Cow position: | chr18:33142513-33141914 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 120 |
| Conread position: | 178-775 |
| Cow position: | chr18:27837048-27837658 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 122 |
| Conread position: | 179-767 |
| Cow position: | chr18:51661602-51661007 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 91 |
| Conread position: | 180-767 |
| Cow position: | chr18:19353620-19353033 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 131 |
| Conread position: | 181-775 |
| Cow position: | chr18:23798905-23798302 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 127 |
| Conread position: | 181-775 |
| Cow position: | chr18:29238155-29237597 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 392 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 17, 86 |
| Conread position: | 182-793 |
| Cow position: | chr18:20692917-20693526 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 381 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 41, 83 |
| Conread position: | 185-550 |
| Cow position: | chr18:47742757-47742388 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 205-758 |
| Cow position: | chr18:37489743-37489218 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 358 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 14, 109 |
| Conread position: | 211-413 |
| Cow position: | chr18:34042676-34042478 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 27, 76 |
| Conread position: | 211-529 |
| Cow position: | chr18:15856456-15856149 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 31 |
| Conread position: | 231-789 |
| Cow position: | chr18:17197211-17197769 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 357 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 11, 70 |
| Conread position: | 231-793 |
| Cow position: | chr18:28972684-28973247 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 72 |
| Conread position: | 232-781 |
| Cow position: | chr18:51239485-51238949 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 72 |
| Conread position: | 232-793 |
| Cow position: | chr18:32653417-32652853 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 71 |
| Conread position: | 238-769 |
| Cow position: | chr18:25364393-25363880 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 350 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 223, 37 |
| Conread position: | 239-793 |
| Cow position: | chr18:33952389-33952941 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 61 |
| Conread position: | 263-468 |
| Cow position: | chr18:45946679-45946881 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 280-682 |
| Cow position: | chr18:32768808-32768408 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 23 |
| Conread position: | 315-793 |
| Cow position: | chr18:54170416-54170896 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 153 |
| Conread position: | 316-772 |
| Cow position: | chr18:33269939-33269488 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 193 |
| Conread position: | 324-789 |
| Cow position: | chr18:33751120-33750658 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 89 |
| Conread position: | 555-793 |
| Cow position: | chr18:51276134-51276367 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 669-788 |
| Cow position: | chr18:15856155-15856033 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
Show alignments to all cow chromosomes.