Cow genome map
| Conread name: | Thy1-THY010068C08 |
| Conread position: | 1-159 |
| Cow position: | chr19:354581-354419 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 130 |
| Conread position: | 177-440 |
| Cow position: | chr19:892359-892626 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 57, 12 |
| Conread position: | 177-507 |
| Cow position: | chr19:5730137-5729804 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 238 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 56, 123 |
| Conread position: | 177-514 |
| Cow position: | chr19:167292-167646 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 56, 165 |
| Conread position: | 177-533 |
| Cow position: | chr19:173522-173137 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 263 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 51, 46 |
| Conread position: | 177-534 |
| Cow position: | chr19:11521901-11522262 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 113 |
| Conread position: | 177-624 |
| Cow position: | chr19:1656694-1656230 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 59, 130 |
| Conread position: | 177-641 |
| Cow position: | chr19:28594815-28594344 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 43 |
| Conread position: | 177-691 |
| Cow position: | chr19:135525-136047 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 135 |
| Conread position: | 177-751 |
| Cow position: | chr19:39565-38978 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 47 |
| Conread position: | 177-765 |
| Cow position: | chr19:7070569-7069984 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 110 |
| Conread position: | 177-767 |
| Cow position: | chr19:7343334-7342733 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 134 |
| Conread position: | 177-767 |
| Cow position: | chr19:33874692-33874092 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 134 |
| Conread position: | 177-771 |
| Cow position: | chr19:32181810-32182421 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 143 |
| Conread position: | 177-772 |
| Cow position: | chr19:20105992-20105374 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 133 |
| Conread position: | 177-772 |
| Cow position: | chr19:32210809-32211412 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 57 |
| Conread position: | 177-788 |
| Cow position: | chr19:4386880-4386273 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 132 |
| Conread position: | 177-788 |
| Cow position: | chr19:39184275-39184892 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 131 |
| Conread position: | 177-793 |
| Cow position: | chr19:12774378-12773758 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 132 |
| Conread position: | 177-793 |
| Cow position: | chr19:39391775-39391151 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 134 |
| Conread position: | 178-685 |
| Cow position: | chr19:9706896-9707381 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 56 |
| Conread position: | 179-742 |
| Cow position: | chr19:32194290-32193705 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 44 |
| Conread position: | 179-772 |
| Cow position: | chr19:773864-773256 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 20 |
| Conread position: | 180-719 |
| Cow position: | chr19:3113515-3112979 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 369 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 23, 76 |
| Conread position: | 181-775 |
| Cow position: | chr19:438178-438777 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 116 |
| Conread position: | 182-459 |
| Cow position: | chr19:48860951-48861225 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 27, 51 |
| Conread position: | 182-498 |
| Cow position: | chr19:51673850-51674162 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 25, 129 |
| Conread position: | 185-412 |
| Cow position: | chr19:30756477-30756238 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 51, 139 |
| Conread position: | 187-468 |
| Cow position: | chr19:52842811-52842536 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 31, 122 |
| Conread position: | 229-491 |
| Cow position: | chr19:39096354-39096101 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 93, 183 |
| Conread position: | 231-793 |
| Cow position: | chr19:3139135-3138582 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 68 |
| Conread position: | 232-466 |
| Cow position: | chr19:28367213-28366987 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 32, 50 |
| Conread position: | 232-498 |
| Cow position: | chr19:31441712-31441449 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 70 |
| Conread position: | 232-526 |
| Cow position: | chr19:35384410-35384698 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 246, 65 |
| Conread position: | 232-769 |
| Cow position: | chr19:28580460-28580994 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 71 |
| Conread position: | 232-769 |
| Cow position: | chr19:40851247-40851769 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 71 |
| Conread position: | 232-775 |
| Cow position: | chr19:2273182-2273720 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 59 |
| Conread position: | 232-779 |
| Cow position: | chr19:205186-204614 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 72 |
| Conread position: | 232-792 |
| Cow position: | chr19:11952514-11951948 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 358 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 280, 77 |
| Conread position: | 232-793 |
| Cow position: | chr19:28405502-28406064 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 48 |
| Conread position: | 232-793 |
| Cow position: | chr19:33942813-33942245 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 59 |
| Conread position: | 245-484 |
| Cow position: | chr19:35379772-35379544 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 262-496 |
| Cow position: | chr19:24834842-24835078 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 145, 41 |
| Conread position: | 262-764 |
| Cow position: | chr19:347155-347650 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 145 |
| Conread position: | 263-685 |
| Cow position: | chr19:5027897-5028321 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 41 |
| Conread position: | 277-590 |
| Cow position: | chr19:55926292-55926598 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 297-688 |
| Cow position: | chr19:190521-190120 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 110, 25 |
| Conread position: | 300-793 |
| Cow position: | chr19:40886608-40887102 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 14 |
| Conread position: | 316-767 |
| Cow position: | chr19:52150712-52151164 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 131 |
| Conread position: | 329-485 |
| Cow position: | chr19:1489920-1490073 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 392-763 |
| Cow position: | chr19:32204190-32203817 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 239 |
| Conread position: | 457-769 |
| Cow position: | chr19:892622-892938 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 204 |
| Conread position: | 513-793 |
| Cow position: | chr19:5729753-5729476 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 33, 48 |
| Conread position: | 520-789 |
| Cow position: | chr19:35384831-35385103 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 26, 257 |
Show alignments to all cow chromosomes.