Cow genome map
| Conread name: | Thy1-THY010068C08 |
| Conread position: | 168-760 |
| Cow position: | chr21:37149384-37148785 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 71 |
| Conread position: | 177-465 |
| Cow position: | chr21:30598141-30598428 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 53, 86 |
| Conread position: | 177-473 |
| Cow position: | chr21:2673665-2673968 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 55, 134 |
| Conread position: | 177-652 |
| Cow position: | chr21:23297488-23297955 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 33 |
| Conread position: | 177-685 |
| Cow position: | chr21:27069625-27070145 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 120 |
| Conread position: | 177-693 |
| Cow position: | chr21:33253521-33252991 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 123 |
| Conread position: | 177-767 |
| Cow position: | chr21:39426400-39425803 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 119 |
| Conread position: | 177-769 |
| Cow position: | chr21:1193094-1192498 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 106 |
| Conread position: | 177-771 |
| Cow position: | chr21:218366-217790 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 109 |
| Conread position: | 177-775 |
| Cow position: | chr21:2882399-2883006 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 132 |
| Conread position: | 177-776 |
| Cow position: | chr21:10851425-10850811 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 24 |
| Conread position: | 177-779 |
| Cow position: | chr21:147265-146656 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 27 |
| Conread position: | 177-789 |
| Cow position: | chr21:21943425-21944044 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 65 |
| Conread position: | 177-793 |
| Cow position: | chr21:5839924-5840550 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 131 |
| Conread position: | 177-793 |
| Cow position: | chr21:18817207-18817843 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 392 |
| Conread position: | 177-793 |
| Cow position: | chr21:21916027-21915404 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 248 |
| Conread position: | 177-793 |
| Cow position: | chr21:37372577-37371961 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 110 |
| Conread position: | 177-793 |
| Cow position: | chr21:40270333-40270958 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 135 |
| Conread position: | 178-510 |
| Cow position: | chr21:42914702-42914367 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 128 |
| Conread position: | 178-770 |
| Cow position: | chr21:3780108-3779506 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 134 |
| Conread position: | 178-793 |
| Cow position: | chr21:39088336-39087721 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 101 |
| Conread position: | 179-367 |
| Cow position: | chr21:7063839-7063657 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 179-452 |
| Cow position: | chr21:27036062-27036341 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 54, 121 |
| Conread position: | 179-793 |
| Cow position: | chr21:12054681-12055285 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 55 |
| Conread position: | 181-391 |
| Cow position: | chr21:4716350-4716138 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 124 |
| Conread position: | 181-568 |
| Cow position: | chr21:3169726-3169339 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 266 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 44, 98 |
| Conread position: | 181-793 |
| Cow position: | chr21:25782973-25782356 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 137 |
| Conread position: | 182-510 |
| Cow position: | chr21:34822878-34823211 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-767 |
| Cow position: | chr21:11506945-11506337 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 127 |
| Conread position: | 186-689 |
| Cow position: | chr21:360991-360462 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 526 |
| Conread position: | 187-472 |
| Cow position: | chr21:36979587-36979873 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 42, 36 |
| Conread position: | 187-556 |
| Cow position: | chr21:2512176-2511796 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 94 |
| Conread position: | 189-767 |
| Cow position: | chr21:30400-29821 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 117 |
| Conread position: | 204-476 |
| Cow position: | chr21:28985418-28985152 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 48, 97 |
| Conread position: | 204-695 |
| Cow position: | chr21:1688852-1689346 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 24 |
| Conread position: | 231-468 |
| Cow position: | chr21:45786153-45786389 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 120, 73 |
| Conread position: | 231-483 |
| Cow position: | chr21:45782760-45782510 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 232-489 |
| Cow position: | chr21:26836174-26835913 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 71, 107 |
| Conread position: | 232-501 |
| Cow position: | chr21:45491325-45491060 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 147, 19 |
| Conread position: | 232-593 |
| Cow position: | chr21:5018391-5018031 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 71 |
| Conread position: | 232-660 |
| Cow position: | chr21:31515041-31515477 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 385 |
| Conread position: | 232-769 |
| Cow position: | chr21:4588705-4589250 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 169 |
| Conread position: | 232-793 |
| Cow position: | chr21:2417491-2416930 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 31 |
| Conread position: | 235-688 |
| Cow position: | chr21:49325732-49325289 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 36 |
| Conread position: | 238-453 |
| Cow position: | chr21:29625473-29625685 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 238-466 |
| Cow position: | chr21:24085353-24085577 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 177, 12 |
| Conread position: | 238-793 |
| Cow position: | chr21:37046891-37046336 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 64 |
| Conread position: | 241-789 |
| Cow position: | chr21:1075336-1074794 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 343 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 26, 36 |
| Conread position: | 242-791 |
| Cow position: | chr21:2901021-2900467 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 343 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 140, 58 |
| Conread position: | 259-750 |
| Cow position: | chr21:38806072-38806546 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 315 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 234, 34 |
| Conread position: | 262-700 |
| Cow position: | chr21:13314002-13313571 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 49 |
| Conread position: | 262-793 |
| Cow position: | chr21:10567914-10567389 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 41 |
| Conread position: | 263-779 |
| Cow position: | chr21:46916921-46916400 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 38 |
| Conread position: | 266-620 |
| Cow position: | chr21:34001439-34001785 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 242 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 244, 29 |
| Conread position: | 274-536 |
| Cow position: | chr21:6625007-6624747 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 304-793 |
| Cow position: | chr21:1287011-1287504 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 22 |
| Conread position: | 309-793 |
| Cow position: | chr21:4078037-4077550 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 16 |
| Conread position: | 315-720 |
| Cow position: | chr21:37718822-37719231 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 231 |
| Conread position: | 318-741 |
| Cow position: | chr21:20743387-20743807 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 63 |
| Conread position: | 325-501 |
| Cow position: | chr21:28613281-28613106 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 350-691 |
| Cow position: | chr21:27566800-27566463 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 130 |
| Conread position: | 393-793 |
| Cow position: | chr21:25625759-25625360 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 121, 66 |
| Conread position: | 397-793 |
| Cow position: | chr21:47941973-47941572 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 295 |
| Conread position: | 458-745 |
| Cow position: | chr21:26743133-26743416 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 13, 182 |
| Conread position: | 471-769 |
| Cow position: | chr21:30598880-30599184 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 43, 200 |
| Conread position: | 522-772 |
| Cow position: | chr21:6622581-6622327 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 13, 105 |
| Conread position: | 539-793 |
| Cow position: | chr21:2502842-2502586 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 20, 52 |
| Conread position: | 545-793 |
| Cow position: | chr21:10283826-10283583 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 15, 68 |
Show alignments to all cow chromosomes.