Cow genome map
| Conread name: | Thy1-THY010068C08 |
| Conread position: | 174-485 |
| Cow position: | chr22:45510370-45510674 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 52, 84 |
| Conread position: | 176-792 |
| Cow position: | chr22:2394820-2395453 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 86 |
| Conread position: | 176-792 |
| Cow position: | chr22:9045300-9044695 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 140 |
| Conread position: | 176-793 |
| Cow position: | chr22:12730518-12731126 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 135 |
| Conread position: | 176-793 |
| Cow position: | chr22:15312781-15313407 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 40 |
| Conread position: | 177-349 |
| Cow position: | chr22:45582086-45581916 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 46, 81 |
| Conread position: | 177-379 |
| Cow position: | chr22:30677519-30677723 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 130 |
| Conread position: | 177-585 |
| Cow position: | chr22:37133822-37133407 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 35 |
| Conread position: | 177-636 |
| Cow position: | chr22:37141068-37140609 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 136 |
| Conread position: | 177-685 |
| Cow position: | chr22:37292496-37293020 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 135 |
| Conread position: | 177-752 |
| Cow position: | chr22:3803352-3802780 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 132 |
| Conread position: | 177-757 |
| Cow position: | chr22:6332878-6332297 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 135 |
| Conread position: | 177-760 |
| Cow position: | chr22:522227-522818 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 22 |
| Conread position: | 177-767 |
| Cow position: | chr22:1879973-1879361 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 317 |
| Conread position: | 177-767 |
| Cow position: | chr22:36184928-36184325 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 89 |
| Conread position: | 177-772 |
| Cow position: | chr22:538272-537663 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 22 |
| Conread position: | 177-772 |
| Cow position: | chr22:694790-694188 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 123 |
| Conread position: | 177-772 |
| Cow position: | chr22:10908670-10909271 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 130 |
| Conread position: | 177-772 |
| Cow position: | chr22:18028454-18027844 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 46 |
| Conread position: | 177-772 |
| Cow position: | chr22:44492221-44491597 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 47 |
| Conread position: | 177-775 |
| Cow position: | chr22:559539-560141 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 134 |
| Conread position: | 177-775 |
| Cow position: | chr22:31333879-31334475 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 59 |
| Conread position: | 177-775 |
| Cow position: | chr22:44935138-44934544 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 123 |
| Conread position: | 177-779 |
| Cow position: | chr22:19142524-19143131 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 185 |
| Conread position: | 177-779 |
| Cow position: | chr22:39468350-39468961 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 127 |
| Conread position: | 177-793 |
| Cow position: | chr22:3277191-3277813 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 134 |
| Conread position: | 177-793 |
| Cow position: | chr22:6501968-6502590 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 24 |
| Conread position: | 178-759 |
| Cow position: | chr22:37268333-37267738 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 138 |
| Conread position: | 178-764 |
| Cow position: | chr22:36860372-36860960 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 134 |
| Conread position: | 178-793 |
| Cow position: | chr22:34169506-34168880 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 121 |
| Conread position: | 179-772 |
| Cow position: | chr22:20239675-20240280 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 130 |
| Conread position: | 179-793 |
| Cow position: | chr22:11803887-11804515 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 130 |
| Conread position: | 180-379 |
| Cow position: | chr22:96188-96383 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 180-739 |
| Cow position: | chr22:46617204-46617740 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 371 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 55, 137 |
| Conread position: | 181-550 |
| Cow position: | chr22:16202093-16201716 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 260 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 53, 130 |
| Conread position: | 181-590 |
| Cow position: | chr22:37412304-37411902 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 50, 71 |
| Conread position: | 181-793 |
| Cow position: | chr22:21590499-21589879 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 128 |
| Conread position: | 182-745 |
| Cow position: | chr22:35906227-35906812 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 379 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 86, 44 |
| Conread position: | 182-767 |
| Cow position: | chr22:1323370-1322788 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 130 |
| Conread position: | 182-767 |
| Cow position: | chr22:27308613-27309208 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 129 |
| Conread position: | 185-684 |
| Cow position: | chr22:290542-291044 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 185-767 |
| Cow position: | chr22:5232130-5232712 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 127 |
| Conread position: | 185-767 |
| Cow position: | chr22:44368455-44369058 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 126 |
| Conread position: | 187-764 |
| Cow position: | chr22:13673652-13674224 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 365 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 29, 132 |
| Conread position: | 189-791 |
| Cow position: | chr22:38176247-38175651 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 119 |
| Conread position: | 201-378 |
| Cow position: | chr22:24536901-24536722 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 104 |
| Conread position: | 203-551 |
| Cow position: | chr22:36276761-36276408 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 114, 33 |
| Conread position: | 205-769 |
| Cow position: | chr22:11032882-11032320 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 101 |
| Conread position: | 207-696 |
| Cow position: | chr22:35913030-35913509 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 101 |
| Conread position: | 232-377 |
| Cow position: | chr22:8120976-8121122 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 90, 67 |
| Conread position: | 232-582 |
| Cow position: | chr22:37992938-37993290 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 85, 120 |
| Conread position: | 232-595 |
| Cow position: | chr22:1281622-1281981 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 169 |
| Conread position: | 232-656 |
| Cow position: | chr22:17327352-17327775 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 59 |
| Conread position: | 232-662 |
| Cow position: | chr22:41418219-41418625 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 292 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 332, 61 |
| Conread position: | 232-685 |
| Cow position: | chr22:44350557-44351012 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 54 |
| Conread position: | 232-769 |
| Cow position: | chr22:18815261-18815812 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 432 |
| Conread position: | 232-793 |
| Cow position: | chr22:42992278-42991721 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 71 |
| Conread position: | 237-779 |
| Cow position: | chr22:41240465-41239930 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 32 |
| Conread position: | 238-453 |
| Cow position: | chr22:23770851-23770643 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 238-688 |
| Cow position: | chr22:36590184-36590639 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 76 |
| Conread position: | 238-772 |
| Cow position: | chr22:6021762-6021225 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 62 |
| Conread position: | 238-772 |
| Cow position: | chr22:24951207-24950660 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 247 |
| Conread position: | 238-793 |
| Cow position: | chr22:31314444-31313888 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 53 |
| Conread position: | 238-793 |
| Cow position: | chr22:37071983-37072536 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 369 |
| Conread position: | 239-793 |
| Cow position: | chr22:44397552-44396992 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 329 |
| Conread position: | 243-498 |
| Cow position: | chr22:5937063-5937312 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 90, 51 |
| Conread position: | 251-688 |
| Cow position: | chr22:36579498-36579942 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 48 |
| Conread position: | 262-642 |
| Cow position: | chr22:8737256-8737619 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 41 |
| Conread position: | 305-793 |
| Cow position: | chr22:18324815-18325271 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 310 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 264, 27 |
| Conread position: | 314-788 |
| Cow position: | chr22:44458079-44457604 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 100 |
| Conread position: | 315-751 |
| Cow position: | chr22:45930695-45930263 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 294 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 100, 74 |
| Conread position: | 329-748 |
| Cow position: | chr22:6142377-6142790 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 92 |
| Conread position: | 329-762 |
| Cow position: | chr22:39919901-39919478 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 269 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 240, 105 |
| Conread position: | 333-789 |
| Cow position: | chr22:8135114-8135561 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 11 |
| Conread position: | 348-772 |
| Cow position: | chr22:35671363-35671792 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 408-766 |
| Cow position: | chr22:41843240-41843591 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 103, 154 |
| Conread position: | 439-793 |
| Cow position: | chr22:36129815-36129456 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 270 |
| Conread position: | 486-779 |
| Cow position: | chr22:5940456-5940735 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 29, 53 |
| Conread position: | 530-737 |
| Cow position: | chr22:35940160-35940370 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 143 |
Show alignments to all cow chromosomes.