Cow genome map
| Conread name: | Thy1-THY010068C08 |
| Conread position: | 145-793 |
| Cow position: | chr23:28914589-28913938 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 204 |
| Conread position: | 169-527 |
| Cow position: | chr23:8287207-8286842 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 144 |
| Conread position: | 170-630 |
| Cow position: | chr23:7369697-7369253 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 85 |
| Conread position: | 172-532 |
| Cow position: | chr23:29402548-29402913 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 140 |
| Conread position: | 174-483 |
| Cow position: | chr23:13512277-13511966 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 65, 38 |
| Conread position: | 174-508 |
| Cow position: | chr23:18127118-18127447 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 59, 101 |
| Conread position: | 176-494 |
| Cow position: | chr23:5739189-5739510 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 132 |
| Conread position: | 177-492 |
| Cow position: | chr23:25534483-25534165 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 58, 123 |
| Conread position: | 177-526 |
| Cow position: | chr23:1957052-1956715 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 47 |
| Conread position: | 177-552 |
| Cow position: | chr23:14963882-14964258 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 76 |
| Conread position: | 177-561 |
| Cow position: | chr23:38581881-38581515 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 50 |
| Conread position: | 177-593 |
| Cow position: | chr23:15041598-15042000 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 49 |
| Conread position: | 177-602 |
| Cow position: | chr23:965325-965762 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 135 |
| Conread position: | 177-653 |
| Cow position: | chr23:25682788-25683253 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 59 |
| Conread position: | 177-673 |
| Cow position: | chr23:15876402-15876909 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 344 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 58, 94 |
| Conread position: | 177-686 |
| Cow position: | chr23:1012634-1013138 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 320 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 88, 24 |
| Conread position: | 177-756 |
| Cow position: | chr23:22146144-22146716 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 127 |
| Conread position: | 177-761 |
| Cow position: | chr23:19949424-19950020 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 440 |
| Conread position: | 177-762 |
| Cow position: | chr23:15526734-15526140 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 47 |
| Conread position: | 177-775 |
| Cow position: | chr23:3879918-3880519 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 134 |
| Conread position: | 177-779 |
| Cow position: | chr23:19490710-19490100 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 300 |
| Conread position: | 177-779 |
| Cow position: | chr23:36030210-36030817 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 121 |
| Conread position: | 177-793 |
| Cow position: | chr23:2025916-2026538 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 132 |
| Conread position: | 177-793 |
| Cow position: | chr23:3707292-3706664 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 125 |
| Conread position: | 177-793 |
| Cow position: | chr23:4639460-4640080 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 119 |
| Conread position: | 177-793 |
| Cow position: | chr23:20155046-20155666 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 180 |
| Conread position: | 178-720 |
| Cow position: | chr23:29451186-29451725 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 122 |
| Conread position: | 178-788 |
| Cow position: | chr23:28025824-28025218 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 131 |
| Conread position: | 178-793 |
| Cow position: | chr23:27971696-27971083 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 240 |
| Conread position: | 179-592 |
| Cow position: | chr23:6220418-6219997 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 286 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 55, 238 |
| Conread position: | 179-641 |
| Cow position: | chr23:23171666-23171195 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 130 |
| Conread position: | 181-779 |
| Cow position: | chr23:16614274-16614878 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 83 |
| Conread position: | 181-793 |
| Cow position: | chr23:4818185-4817565 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 83 |
| Conread position: | 181-793 |
| Cow position: | chr23:27400685-27400049 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 182-779 |
| Cow position: | chr23:2717548-2716949 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 116 |
| Conread position: | 185-760 |
| Cow position: | chr23:11779944-11779362 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 119 |
| Conread position: | 187-767 |
| Cow position: | chr23:2312083-2312671 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 122 |
| Conread position: | 193-534 |
| Cow position: | chr23:948654-948986 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 53, 41 |
| Conread position: | 193-793 |
| Cow position: | chr23:618324-618902 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 108 |
| Conread position: | 205-411 |
| Cow position: | chr23:31648913-31649112 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 219-614 |
| Cow position: | chr23:2780854-2781246 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 253, 56 |
| Conread position: | 232-491 |
| Cow position: | chr23:26159611-26159878 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 91, 71 |
| Conread position: | 232-660 |
| Cow position: | chr23:2758993-2758568 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 68 |
| Conread position: | 232-767 |
| Cow position: | chr23:4511169-4510639 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 133 |
| Conread position: | 232-768 |
| Cow position: | chr23:15218797-15219334 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 71 |
| Conread position: | 232-771 |
| Cow position: | chr23:11077113-11077646 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 28 |
| Conread position: | 232-771 |
| Cow position: | chr23:13510740-13510226 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 353 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 314, 68 |
| Conread position: | 232-793 |
| Cow position: | chr23:4889789-4889227 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 70 |
| Conread position: | 237-602 |
| Cow position: | chr23:5873479-5873831 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 66 |
| Conread position: | 238-789 |
| Cow position: | chr23:2342177-2341643 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 64 |
| Conread position: | 265-463 |
| Cow position: | chr23:2440785-2440979 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 121, 38 |
| Conread position: | 270-503 |
| Cow position: | chr23:4754169-4753931 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 48, 33 |
| Conread position: | 272-486 |
| Cow position: | chr23:7045378-7045588 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 277-793 |
| Cow position: | chr23:14262909-14262409 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 32 |
| Conread position: | 317-767 |
| Cow position: | chr23:28218307-28217859 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 156 |
| Conread position: | 321-685 |
| Cow position: | chr23:14778149-14778510 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 198, 87 |
| Conread position: | 343-685 |
| Cow position: | chr23:7337118-7336771 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 168, 116 |
| Conread position: | 353-793 |
| Cow position: | chr23:4360794-4360352 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 111 |
| Conread position: | 374-793 |
| Cow position: | chr23:14973599-14974014 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 280 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 88, 173 |
| Conread position: | 425-793 |
| Cow position: | chr23:14947830-14948196 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 85 |
| Conread position: | 630-793 |
| Cow position: | chr23:3861014-3861180 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 59 |
Show alignments to all cow chromosomes.