Cow genome map
| Conread name: | Thy1-THY010068C08 |
| Conread position: | 168-775 |
| Cow position: | chr29:2101039-2100423 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 31 |
| Conread position: | 174-765 |
| Cow position: | chr29:31182587-31181985 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 126 |
| Conread position: | 177-493 |
| Cow position: | chr29:2747260-2747573 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 124 |
| Conread position: | 177-514 |
| Cow position: | chr29:801220-801555 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 246 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 140, 58 |
| Conread position: | 177-558 |
| Cow position: | chr29:38237338-38237728 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 26, 140 |
| Conread position: | 177-640 |
| Cow position: | chr29:37165312-37164847 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 29 |
| Conread position: | 177-659 |
| Cow position: | chr29:32287360-32286890 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 58 |
| Conread position: | 177-659 |
| Cow position: | chr29:32541275-32540783 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 135 |
| Conread position: | 177-685 |
| Cow position: | chr29:23977303-23976784 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 122 |
| Conread position: | 177-717 |
| Cow position: | chr29:14210389-14210938 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 123 |
| Conread position: | 177-739 |
| Cow position: | chr29:13583259-13582685 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 134 |
| Conread position: | 177-769 |
| Cow position: | chr29:10647069-10647672 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 123 |
| Conread position: | 177-769 |
| Cow position: | chr29:16111566-16110956 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 316 |
| Conread position: | 177-772 |
| Cow position: | chr29:609463-610042 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 40 |
| Conread position: | 177-772 |
| Cow position: | chr29:14084949-14085553 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 132 |
| Conread position: | 177-775 |
| Cow position: | chr29:39078527-39079134 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 133 |
| Conread position: | 177-779 |
| Cow position: | chr29:38228158-38227550 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 134 |
| Conread position: | 177-793 |
| Cow position: | chr29:47258-47913 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 135 |
| Conread position: | 177-793 |
| Cow position: | chr29:251927-251331 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 142 |
| Conread position: | 177-793 |
| Cow position: | chr29:14587098-14586476 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 130 |
| Conread position: | 177-793 |
| Cow position: | chr29:20252347-20251718 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 123 |
| Conread position: | 177-793 |
| Cow position: | chr29:34798629-34799251 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 135 |
| Conread position: | 177-793 |
| Cow position: | chr29:43323738-43323113 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 133 |
| Conread position: | 178-764 |
| Cow position: | chr29:26163657-26164244 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 131 |
| Conread position: | 178-767 |
| Cow position: | chr29:19886257-19885646 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 21 |
| Conread position: | 178-769 |
| Cow position: | chr29:10822803-10823392 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 134 |
| Conread position: | 178-769 |
| Cow position: | chr29:21238217-21238792 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 332, 40 |
| Conread position: | 178-793 |
| Cow position: | chr29:40501804-40502424 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 112 |
| Conread position: | 179-411 |
| Cow position: | chr29:13622679-13622905 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 179-695 |
| Cow position: | chr29:7845565-7845033 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 130 |
| Conread position: | 179-720 |
| Cow position: | chr29:35297995-35297481 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 55 |
| Conread position: | 179-769 |
| Cow position: | chr29:32891968-32891385 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 136 |
| Conread position: | 179-779 |
| Cow position: | chr29:27979747-27980358 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 179-793 |
| Cow position: | chr29:32558579-32559202 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 45 |
| Conread position: | 181-463 |
| Cow position: | chr29:3176245-3176519 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 54, 131 |
| Conread position: | 181-771 |
| Cow position: | chr29:9620589-9619998 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 133 |
| Conread position: | 181-772 |
| Cow position: | chr29:11227483-11228075 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 35 |
| Conread position: | 181-779 |
| Cow position: | chr29:5958766-5958168 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 53 |
| Conread position: | 181-779 |
| Cow position: | chr29:7430042-7430650 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 131 |
| Conread position: | 182-652 |
| Cow position: | chr29:6213697-6213220 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 315 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 54, 42 |
| Conread position: | 185-584 |
| Cow position: | chr29:21265102-21264709 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 21 |
| Conread position: | 185-769 |
| Cow position: | chr29:6265095-6265697 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 117 |
| Conread position: | 185-792 |
| Cow position: | chr29:18855778-18856390 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 124 |
| Conread position: | 185-793 |
| Cow position: | chr29:668898-669505 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 49 |
| Conread position: | 190-465 |
| Cow position: | chr29:15946667-15946933 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 194-634 |
| Cow position: | chr29:43408466-43408903 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 120 |
| Conread position: | 197-793 |
| Cow position: | chr29:31023646-31024220 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 386 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 76, 33 |
| Conread position: | 203-751 |
| Cow position: | chr29:35263817-35263293 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 97 |
| Conread position: | 232-473 |
| Cow position: | chr29:8061010-8061247 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 138, 67 |
| Conread position: | 232-483 |
| Cow position: | chr29:27262781-27263026 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 232-772 |
| Cow position: | chr29:2949247-2949762 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 23 |
| Conread position: | 232-775 |
| Cow position: | chr29:25931415-25931966 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 384 |
| Conread position: | 232-778 |
| Cow position: | chr29:21425909-21426452 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 159 |
| Conread position: | 238-769 |
| Cow position: | chr29:9642647-9643181 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 40 |
| Conread position: | 262-572 |
| Cow position: | chr29:43791509-43791201 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 208, 38 |
| Conread position: | 262-793 |
| Cow position: | chr29:5981629-5982158 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 41 |
| Conread position: | 262-793 |
| Cow position: | chr29:15967776-15968308 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 38 |
| Conread position: | 269-760 |
| Cow position: | chr29:2840295-2840791 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 47 |
| Conread position: | 292-607 |
| Cow position: | chr29:30259530-30259842 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 12 |
| Conread position: | 304-695 |
| Cow position: | chr29:41366640-41367034 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 112 |
| Conread position: | 322-793 |
| Cow position: | chr29:32804467-32803995 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 158 |
| Conread position: | 348-793 |
| Cow position: | chr29:34926481-34926031 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 129 |
| Conread position: | 360-793 |
| Cow position: | chr29:15893858-15894297 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 40 |
| Conread position: | 518-787 |
| Cow position: | chr29:3176767-3177034 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 113, 97 |
| Conread position: | 544-767 |
| Cow position: | chr29:15785154-15785381 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 20, 196 |
Show alignments to all cow chromosomes.