Cow genome map
| Conread name: | Thy1-THY010068C08 |
| Conread position: | 170-588 |
| Cow position: | chr4:16057587-16057161 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 141 |
| Conread position: | 171-530 |
| Cow position: | chr4:49716577-49716218 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 248 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 35, 69 |
| Conread position: | 172-624 |
| Cow position: | chr4:44780320-44780779 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 118 |
| Conread position: | 174-536 |
| Cow position: | chr4:33494492-33494127 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 85 |
| Conread position: | 174-770 |
| Cow position: | chr4:1367266-1367864 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 79 |
| Conread position: | 176-460 |
| Cow position: | chr4:54239873-54239597 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 60, 144 |
| Conread position: | 176-684 |
| Cow position: | chr4:16360816-16360296 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 125 |
| Conread position: | 176-767 |
| Cow position: | chr4:60263259-60263858 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 138 |
| Conread position: | 177-397 |
| Cow position: | chr4:34178336-34178563 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 136 |
| Conread position: | 177-440 |
| Cow position: | chr4:967177-967447 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 25, 137 |
| Conread position: | 177-448 |
| Cow position: | chr4:69521437-69521188 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 177-500 |
| Cow position: | chr4:10062323-10062001 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 94 |
| Conread position: | 177-516 |
| Cow position: | chr4:19252344-19252009 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 38, 129 |
| Conread position: | 177-593 |
| Cow position: | chr4:14776351-14775919 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 86 |
| Conread position: | 177-620 |
| Cow position: | chr4:5443932-5444386 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 134 |
| Conread position: | 177-636 |
| Cow position: | chr4:16639512-16639045 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 124 |
| Conread position: | 177-647 |
| Cow position: | chr4:50975529-50975040 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 63 |
| Conread position: | 177-660 |
| Cow position: | chr4:1049360-1049851 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 146 |
| Conread position: | 177-662 |
| Cow position: | chr4:6206501-6206004 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 66 |
| Conread position: | 177-693 |
| Cow position: | chr4:17925066-17925583 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 177-739 |
| Cow position: | chr4:28832462-28831890 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 22 |
| Conread position: | 177-764 |
| Cow position: | chr4:43882004-43881410 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 129 |
| Conread position: | 177-767 |
| Cow position: | chr4:1929741-1930323 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 134 |
| Conread position: | 177-767 |
| Cow position: | chr4:4416959-4416376 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 59 |
| Conread position: | 177-767 |
| Cow position: | chr4:18423623-18424223 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 134 |
| Conread position: | 177-768 |
| Cow position: | chr4:33596422-33595852 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 14 |
| Conread position: | 177-769 |
| Cow position: | chr4:356808-356208 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 120 |
| Conread position: | 177-769 |
| Cow position: | chr4:10882451-10881849 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 177-769 |
| Cow position: | chr4:25598597-25599196 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 135 |
| Conread position: | 177-772 |
| Cow position: | chr4:160062-159450 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 125 |
| Conread position: | 177-772 |
| Cow position: | chr4:530304-529696 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 309 |
| Conread position: | 177-772 |
| Cow position: | chr4:3126704-3126092 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 134 |
| Conread position: | 177-772 |
| Cow position: | chr4:32213064-32212464 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 57 |
| Conread position: | 177-789 |
| Cow position: | chr4:13870904-13870297 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 64 |
| Conread position: | 177-789 |
| Cow position: | chr4:46665426-46664802 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 192 |
| Conread position: | 177-793 |
| Cow position: | chr4:12588231-12587613 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 123 |
| Conread position: | 177-793 |
| Cow position: | chr4:13494230-13493594 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 177-793 |
| Cow position: | chr4:27300584-27301190 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 143 |
| Conread position: | 177-793 |
| Cow position: | chr4:27334612-27333984 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 21 |
| Conread position: | 177-793 |
| Cow position: | chr4:33071921-33072545 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 132 |
| Conread position: | 177-793 |
| Cow position: | chr4:43318740-43319364 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 135 |
| Conread position: | 177-793 |
| Cow position: | chr4:57984887-57984263 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 316 |
| Conread position: | 178-410 |
| Cow position: | chr4:28149318-28149098 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 178-764 |
| Cow position: | chr4:20604628-20604035 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 386 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 60, 100 |
| Conread position: | 179-502 |
| Cow position: | chr4:30472130-30471803 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 131 |
| Conread position: | 179-510 |
| Cow position: | chr4:45106358-45106021 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 42, 130 |
| Conread position: | 179-750 |
| Cow position: | chr4:18337752-18337182 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 57 |
| Conread position: | 179-767 |
| Cow position: | chr4:5881054-5880467 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 130 |
| Conread position: | 181-501 |
| Cow position: | chr4:41955656-41955325 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 53, 18 |
| Conread position: | 184-793 |
| Cow position: | chr4:36897269-36896650 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 116 |
| Conread position: | 185-662 |
| Cow position: | chr4:11110387-11110866 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 14 |
| Conread position: | 185-767 |
| Cow position: | chr4:17092973-17093563 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 126 |
| Conread position: | 187-779 |
| Cow position: | chr4:6489474-6490073 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 114 |
| Conread position: | 187-793 |
| Cow position: | chr4:11836778-11837370 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 25 |
| Conread position: | 191-523 |
| Cow position: | chr4:51042408-51042741 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 115 |
| Conread position: | 192-583 |
| Cow position: | chr4:45298208-45298596 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 7 |
| Conread position: | 197-478 |
| Cow position: | chr4:4178139-4177866 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 205-707 |
| Cow position: | chr4:39270539-39271025 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 32 |
| Conread position: | 232-641 |
| Cow position: | chr4:22474186-22473781 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 227, 68 |
| Conread position: | 232-684 |
| Cow position: | chr4:47254093-47254542 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 74 |
| Conread position: | 232-775 |
| Cow position: | chr4:12240381-12240915 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 71 |
| Conread position: | 238-495 |
| Cow position: | chr4:27294487-27294740 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 238-779 |
| Cow position: | chr4:31670118-31669565 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 251 |
| Conread position: | 266-766 |
| Cow position: | chr4:37621-38120 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 312 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 71, 37 |
| Conread position: | 269-766 |
| Cow position: | chr4:29583409-29583885 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 317 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 198, 54 |
| Conread position: | 280-620 |
| Cow position: | chr4:47521853-47521530 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 99, 31 |
| Conread position: | 306-738 |
| Cow position: | chr4:46573836-46573397 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 21 |
| Conread position: | 308-495 |
| Cow position: | chr4:43398068-43398247 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 314-719 |
| Cow position: | chr4:34183781-34184191 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 15 |
| Conread position: | 316-767 |
| Cow position: | chr4:18191152-18190707 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 387 |
| Conread position: | 318-500 |
| Cow position: | chr4:100049-100231 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 152, 159 |
| Conread position: | 373-789 |
| Cow position: | chr4:18476759-18477169 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 78 |
| Conread position: | 401-793 |
| Cow position: | chr4:7331256-7330874 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 163, 56 |
| Conread position: | 428-779 |
| Cow position: | chr4:17587034-17587378 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 116, 36 |
| Conread position: | 435-613 |
| Cow position: | chr4:38906611-38906431 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 462-789 |
| Cow position: | chr4:54239619-54239290 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 561-793 |
| Cow position: | chr4:9103785-9103554 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 11, 6 |
Show alignments to all cow chromosomes.