Cow genome map

Conread name: Thy1-THY010068C08

Conread position: 1-170
Cow position: chr5:27173005-27173173 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 119
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 164-595
Cow position: chr5:1227690-1227253 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 301
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 62, 109

Conread position: 164-793
Cow position: chr5:4070219-4069591 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 149

Conread position: 166-562
Cow position: chr5:59283326-59282924 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 135

Conread position: 169-793
Cow position: chr5:67594882-67594256 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 391
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 58, 37

Conread position: 170-397
Cow position: chr5:27654816-27654587 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 164
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 66, 85

Conread position: 170-535
Cow position: chr5:13046460-13046084 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 147

Conread position: 174-772
Cow position: chr5:45701315-45700706 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 280

Conread position: 176-752
Cow position: chr5:20429057-20428471 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 361
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 46, 131

Conread position: 177-394
Cow position: chr5:7274842-7274625 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 88, 58

Conread position: 177-398
Cow position: chr5:12731712-12731940 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 157
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 57, 134

Conread position: 177-411
Cow position: chr5:39017034-39016794 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 162
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 56, 132

Conread position: 177-413
Cow position: chr5:24998992-24999230 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 175
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 59, 117

Conread position: 177-468
Cow position: chr5:18885536-18885825 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 207
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 60, 108

Conread position: 177-473
Cow position: chr5:10855819-10856120 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 207
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 53, 120

Conread position: 177-538
Cow position: chr5:40789067-40788690 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 257
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 24, 127

Conread position: 177-562
Cow position: chr5:23669131-23669515 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 266
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 58, 153

Conread position: 177-563
Cow position: chr5:46665015-46664622 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 134

Conread position: 177-743
Cow position: chr5:31707560-31706970 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 318

Conread position: 177-746
Cow position: chr5:3503111-3503698 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 306

Conread position: 177-761
Cow position: chr5:3786924-3786323 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 22

Conread position: 177-767
Cow position: chr5:3965444-3964846 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 47

Conread position: 177-768
Cow position: chr5:18121485-18122081 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 134

Conread position: 177-769
Cow position: chr5:57481541-57482144 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 123

Conread position: 177-771
Cow position: chr5:4386238-4385636 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 132

Conread position: 177-771
Cow position: chr5:53624925-53625497 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 135

Conread position: 177-772
Cow position: chr5:4018197-4018808 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 134

Conread position: 177-772
Cow position: chr5:10775271-10775873 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 125

Conread position: 177-772
Cow position: chr5:41960739-41961333 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 163

Conread position: 177-772
Cow position: chr5:47830080-47830677 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 131

Conread position: 177-779
Cow position: chr5:27908271-27908891 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 110

Conread position: 177-779
Cow position: chr5:48807741-48808353 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 123

Conread position: 177-779
Cow position: chr5:58197013-58196412 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 134

Conread position: 177-779
Cow position: chr5:73488562-73489173 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 46

Conread position: 177-788
Cow position: chr5:10919818-10919202 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 131

Conread position: 177-793
Cow position: chr5:24099663-24099043 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 177-793
Cow position: chr5:37733344-37732722 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 135

Conread position: 177-793
Cow position: chr5:46629181-46629812 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 136

Conread position: 177-793
Cow position: chr5:47893547-47894167 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 137

Conread position: 177-793
Cow position: chr5:64781018-64781641 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 135

Conread position: 178-556
Cow position: chr5:46668940-46668569 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 130

Conread position: 178-670
Cow position: chr5:32773762-32773268 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 56

Conread position: 178-751
Cow position: chr5:41929250-41929800 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 363
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 246, 28

Conread position: 178-772
Cow position: chr5:35526806-35526204 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 112

Conread position: 178-772
Cow position: chr5:41527799-41528367 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 21

Conread position: 178-792
Cow position: chr5:34697598-34696975 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 131

Conread position: 179-525
Cow position: chr5:307331-307685 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 234
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 55, 130

Conread position: 179-767
Cow position: chr5:4757181-4757767 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 332, 55

Conread position: 179-793
Cow position: chr5:35301094-35300469 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 131

Conread position: 179-793
Cow position: chr5:45181149-45181774 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 121

Conread position: 180-772
Cow position: chr5:51769964-51770550 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 330, 58

Conread position: 181-500
Cow position: chr5:49072661-49072973 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 223
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 244, 44

Conread position: 181-532
Cow position: chr5:9419079-9419434 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 55

Conread position: 181-740
Cow position: chr5:32363944-32363404 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 56

Conread position: 181-740
Cow position: chr5:49519554-49518987 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 118

Conread position: 181-779
Cow position: chr5:54791639-54792252 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 201

Conread position: 183-793
Cow position: chr5:27002994-27002402 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 132

Conread position: 184-484
Cow position: chr5:31100445-31100739 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 212
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 7, 16

Conread position: 185-793
Cow position: chr5:18664773-18664162 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 49

Conread position: 186-778
Cow position: chr5:46004867-46005467 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 116

Conread position: 187-758
Cow position: chr5:53006596-53006039 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 386
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 7, 49

Conread position: 189-793
Cow position: chr5:46808290-46807682 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 16

Conread position: 190-696
Cow position: chr5:41956383-41956887 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 37

Conread position: 193-767
Cow position: chr5:26078216-26078800 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 112

Conread position: 194-451
Cow position: chr5:28333469-28333724 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 174
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 12, 65

Conread position: 194-743
Cow position: chr5:28242023-28241475 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 7

Conread position: 206-463
Cow position: chr5:14344469-14344712 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 187
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 16, 100

Conread position: 232-600
Cow position: chr5:41554402-41554764 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 55

Conread position: 232-766
Cow position: chr5:18400757-18401303 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 72

Conread position: 232-775
Cow position: chr5:1341099-1341643 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 59

Conread position: 232-779
Cow position: chr5:30580272-30579712 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 187

Conread position: 232-793
Cow position: chr5:2915383-2914821 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 57

Conread position: 232-793
Cow position: chr5:46737643-46738203 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 14

Conread position: 236-589
Cow position: chr5:27055746-27056105 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 57

Conread position: 238-681
Cow position: chr5:34903119-34902676 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 66

Conread position: 238-688
Cow position: chr5:54861150-54861572 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 55

Conread position: 238-793
Cow position: chr5:44460410-44459853 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 62

Conread position: 239-558
Cow position: chr5:52434473-52434164 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 225
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 35, 65

Conread position: 239-784
Cow position: chr5:69385032-69384482 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 8

Conread position: 240-545
Cow position: chr5:48532948-48532651 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 209
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 249, 62

Conread position: 242-662
Cow position: chr5:39245889-39246309 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 58

Conread position: 246-499
Cow position: chr5:51313273-51313525 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 169
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 43, 57

Conread position: 259-479
Cow position: chr5:47077572-47077365 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 164
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 36, 0

Conread position: 260-662
Cow position: chr5:59639680-59639284 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 275
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 177, 51

Conread position: 268-685
Cow position: chr5:32308496-32308913 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 36

Conread position: 272-772
Cow position: chr5:29766790-29766280 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 30

Conread position: 281-784
Cow position: chr5:46288486-46287986 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 310
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 92, 29

Conread position: 301-501
Cow position: chr5:57577170-57576969 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 140
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 69, 64

Conread position: 304-780
Cow position: chr5:14784508-14784978 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 18

Conread position: 311-484
Cow position: chr5:26346479-26346307 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 143, 0

Conread position: 320-728
Cow position: chr5:49591251-49591659 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 137

Conread position: 322-767
Cow position: chr5:46776916-46776475 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 155

Conread position: 348-655
Cow position: chr5:36443858-36444168 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 164

Conread position: 348-793
Cow position: chr5:242015-241572 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 83

Conread position: 376-769
Cow position: chr5:7274621-7274226 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 89

Conread position: 392-793
Cow position: chr5:51335485-51335875 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 266
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 123, 8

Conread position: 483-793
Cow position: chr5:415032-415346 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 89

Show alignments to all cow chromosomes.