Cow genome map

Conread name: Thy1-THY010068C08

Conread position: 1-151
Cow position: chr9:31061130-31061279 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 75, 102

Conread position: 164-501
Cow position: chr9:3804633-3804282 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 242
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 32, 148

Conread position: 171-677
Cow position: chr9:35315806-35316295 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 142

Conread position: 174-718
Cow position: chr9:17304907-17305460 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 9

Conread position: 174-767
Cow position: chr9:17063313-17063920 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 11

Conread position: 174-793
Cow position: chr9:18508752-18509357 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 62

Conread position: 174-793
Cow position: chr9:51181107-51181743 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 121

Conread position: 176-791
Cow position: chr9:9706611-9705993 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 5

Conread position: 176-793
Cow position: chr9:9014152-9013543 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 46

Conread position: 176-793
Cow position: chr9:44819216-44818621 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 135

Conread position: 176-793
Cow position: chr9:52292468-52291867 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 23

Conread position: 177-387
Cow position: chr9:1995323-1995540 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 153
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 54, 125

Conread position: 177-426
Cow position: chr9:30488661-30488408 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 178
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 50, 91

Conread position: 177-466
Cow position: chr9:3963063-3963353 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 207
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 52, 102

Conread position: 177-478
Cow position: chr9:4283034-4282738 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 213
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 58, 128

Conread position: 177-485
Cow position: chr9:59428077-59427791 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 213
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 58, 0

Conread position: 177-498
Cow position: chr9:21410364-21410034 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 148

Conread position: 177-606
Cow position: chr9:650960-651384 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 63

Conread position: 177-620
Cow position: chr9:27935444-27934995 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 57

Conread position: 177-625
Cow position: chr9:4649538-4649983 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 50

Conread position: 177-641
Cow position: chr9:28655415-28654950 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 319
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 45, 118

Conread position: 177-642
Cow position: chr9:22432340-22431873 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 107

Conread position: 177-680
Cow position: chr9:1981340-1980828 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 88

Conread position: 177-768
Cow position: chr9:60276951-60277549 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 132

Conread position: 177-769
Cow position: chr9:28022873-28022270 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 96

Conread position: 177-769
Cow position: chr9:37970140-37970730 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 46

Conread position: 177-771
Cow position: chr9:29329703-29329124 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 85

Conread position: 177-771
Cow position: chr9:54925615-54925016 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 59

Conread position: 177-772
Cow position: chr9:45874405-45873808 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 134

Conread position: 177-772
Cow position: chr9:50729071-50729654 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 110

Conread position: 177-773
Cow position: chr9:16176836-16176233 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 84

Conread position: 177-775
Cow position: chr9:3764066-3763464 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 131

Conread position: 177-775
Cow position: chr9:27035750-27035142 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 135

Conread position: 177-775
Cow position: chr9:42310745-42310147 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 134

Conread position: 177-779
Cow position: chr9:5005036-5004437 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 132

Conread position: 177-779
Cow position: chr9:6250366-6249755 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 135

Conread position: 177-779
Cow position: chr9:29027144-29027746 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 134

Conread position: 177-779
Cow position: chr9:30673442-30672822 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 160

Conread position: 177-792
Cow position: chr9:10937662-10937021 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 135

Conread position: 177-793
Cow position: chr9:130097-130747 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 417
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 44, 362

Conread position: 177-793
Cow position: chr9:221445-222087 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 221

Conread position: 177-793
Cow position: chr9:3005172-3005803 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 21

Conread position: 177-793
Cow position: chr9:3543917-3543286 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 59

Conread position: 177-793
Cow position: chr9:10322870-10322247 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 131

Conread position: 177-793
Cow position: chr9:22654643-22654014 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 360

Conread position: 177-793
Cow position: chr9:28679039-28678414 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 134

Conread position: 177-793
Cow position: chr9:31808644-31808012 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 123

Conread position: 177-793
Cow position: chr9:32970014-32969392 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 134

Conread position: 177-793
Cow position: chr9:47003253-47002637 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 126

Conread position: 177-793
Cow position: chr9:59481729-59482359 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 134

Conread position: 178-562
Cow position: chr9:33243263-33243663 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 277
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 48, 127

Conread position: 178-767
Cow position: chr9:4942746-4943345 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 128

Conread position: 178-793
Cow position: chr9:5515486-5514867 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 132

Conread position: 178-793
Cow position: chr9:25188166-25187547 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 136

Conread position: 178-793
Cow position: chr9:25632952-25633566 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 18

Conread position: 178-793
Cow position: chr9:29627691-29628305 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 53

Conread position: 179-411
Cow position: chr9:5141777-5141546 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 57, 93

Conread position: 179-760
Cow position: chr9:3148211-3148796 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 25

Conread position: 179-779
Cow position: chr9:1250935-1251544 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 45

Conread position: 181-688
Cow position: chr9:12063052-12062549 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 337
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 54, 22

Conread position: 181-769
Cow position: chr9:37161749-37162348 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 132

Conread position: 182-772
Cow position: chr9:1075154-1075735 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 17

Conread position: 182-772
Cow position: chr9:2866907-2867513 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 395
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 19, 165

Conread position: 185-641
Cow position: chr9:25034651-25035118 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 115

Conread position: 189-793
Cow position: chr9:51211729-51211123 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 15

Conread position: 200-467
Cow position: chr9:30435616-30435341 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 188
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 33, 102

Conread position: 200-694
Cow position: chr9:26102060-26102543 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 12

Conread position: 209-772
Cow position: chr9:34722927-34722367 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 23

Conread position: 211-764
Cow position: chr9:43664814-43664283 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 24

Conread position: 231-780
Cow position: chr9:2476760-2476223 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 49

Conread position: 232-479
Cow position: chr9:12390164-12390408 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 163
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 46

Conread position: 232-556
Cow position: chr9:39731056-39731373 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 46

Conread position: 232-683
Cow position: chr9:13474783-13475245 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 37

Conread position: 232-751
Cow position: chr9:45151178-45150668 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 337
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 189, 56

Conread position: 232-779
Cow position: chr9:3167930-3167402 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 351
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 147, 64

Conread position: 232-793
Cow position: chr9:2172057-2171504 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 363

Conread position: 237-503
Cow position: chr9:32296248-32296505 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 185
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 109, 67

Conread position: 237-511
Cow position: chr9:8165882-8166154 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 187
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 66, 0

Conread position: 237-765
Cow position: chr9:2053755-2053225 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 16

Conread position: 238-563
Cow position: chr9:16629671-16629991 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 213
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 276, 62

Conread position: 238-646
Cow position: chr9:25903506-25903102 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 277
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 224, 62

Conread position: 238-745
Cow position: chr9:7061083-7061588 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 62

Conread position: 268-507
Cow position: chr9:9825119-9824883 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 165
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 202, 32

Conread position: 272-501
Cow position: chr9:39942390-39942172 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 123, 37

Conread position: 296-767
Cow position: chr9:20308210-20308682 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 16

Conread position: 335-779
Cow position: chr9:42569807-42569358 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 212

Conread position: 349-769
Cow position: chr9:59173258-59173681 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 130

Conread position: 385-789
Cow position: chr9:23816839-23816442 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 264
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 96, 14

Conread position: 428-767
Cow position: chr9:3998822-3998479 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 232
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 87, 21

Conread position: 461-789
Cow position: chr9:53701952-53702283 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 233

Conread position: 582-793
Cow position: chr9:9329442-9329654 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 57, 179

Show alignments to all cow chromosomes.