Cow genome map
| Conread name: | Thy1-THY010074B02 |
| Conread position: | 145-396 |
| Cow position: | chr1:68374529-68374279 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 9 |
| Conread position: | 147-405 |
| Cow position: | chr1:94762458-94762706 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 21, 42 |
| Conread position: | 147-422 |
| Cow position: | chr1:37915964-37915691 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 149-401 |
| Cow position: | chr1:28736577-28736325 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 110 |
| Conread position: | 155-396 |
| Cow position: | chr1:4190199-4190441 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 104 |
| Conread position: | 156-396 |
| Cow position: | chr1:11319512-11319273 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 106 |
| Conread position: | 156-396 |
| Cow position: | chr1:25393182-25392942 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 103 |
| Conread position: | 157-429 |
| Cow position: | chr1:61157995-61157719 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 9, 101 |
| Conread position: | 157-641 |
| Cow position: | chr1:64751884-64752362 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 101 |
| Conread position: | 160-396 |
| Cow position: | chr1:93247292-93247526 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 21 |
| Conread position: | 161-505 |
| Cow position: | chr1:92386634-92386308 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 97 |
| Conread position: | 162-396 |
| Cow position: | chr1:64746977-64747217 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 26, 91 |
| Conread position: | 162-396 |
| Cow position: | chr1:65933649-65933416 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 96 |
| Conread position: | 162-401 |
| Cow position: | chr1:94019564-94019803 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 96 |
| Conread position: | 163-389 |
| Cow position: | chr1:30083873-30083649 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 96 |
| Conread position: | 163-394 |
| Cow position: | chr1:17904038-17904262 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 181 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 155, 19 |
| Conread position: | 163-396 |
| Cow position: | chr1:32452566-32452332 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 183 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 85, 9 |
| Conread position: | 163-396 |
| Cow position: | chr1:51056333-51056561 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 96 |
| Conread position: | 163-396 |
| Cow position: | chr1:51764861-51764629 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 95 |
| Conread position: | 163-396 |
| Cow position: | chr1:87741102-87741332 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 75 |
| Conread position: | 163-398 |
| Cow position: | chr1:93128362-93128595 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 95 |
| Conread position: | 163-641 |
| Cow position: | chr1:55332360-55332839 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 95 |
| Conread position: | 164-269 |
| Cow position: | chr1:82061476-82061579 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 164-331 |
| Cow position: | chr1:15754146-15753981 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 164-396 |
| Cow position: | chr1:15205322-15205552 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 39, 76 |
| Conread position: | 164-396 |
| Cow position: | chr1:77374663-77374895 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 154, 92 |
| Conread position: | 164-396 |
| Cow position: | chr1:90816363-90816131 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 181 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 20, 88 |
| Conread position: | 164-398 |
| Cow position: | chr1:4787476-4787703 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 73 |
| Conread position: | 164-401 |
| Cow position: | chr1:62220773-62221009 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-422 |
| Cow position: | chr1:14663242-14662983 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-641 |
| Cow position: | chr1:59393505-59393964 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 165-308 |
| Cow position: | chr1:84247059-84246920 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 165-318 |
| Cow position: | chr1:3446225-3446072 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 61, 98 |
| Conread position: | 165-337 |
| Cow position: | chr1:17423126-17422958 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 151, 37 |
| Conread position: | 165-393 |
| Cow position: | chr1:27873554-27873334 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 148, 60 |
| Conread position: | 165-395 |
| Cow position: | chr1:73690655-73690426 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 93 |
| Conread position: | 165-396 |
| Cow position: | chr1:12018609-12018379 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 93 |
| Conread position: | 165-396 |
| Cow position: | chr1:19557870-19558099 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 96 |
| Conread position: | 165-396 |
| Cow position: | chr1:20969585-20969813 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr1:26948223-26948453 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr1:28653474-28653704 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr1:33458544-33458303 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 96, 72 |
| Conread position: | 165-396 |
| Cow position: | chr1:39287976-39287746 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 93 |
| Conread position: | 165-396 |
| Cow position: | chr1:44187072-44187295 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr1:68371828-68371592 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 67, 73 |
| Conread position: | 165-396 |
| Cow position: | chr1:70162292-70162065 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 83 |
| Conread position: | 165-396 |
| Cow position: | chr1:74010107-74009889 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 153, 16 |
| Conread position: | 165-396 |
| Cow position: | chr1:75437706-75437476 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr1:83321213-83320993 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 150, 84 |
| Conread position: | 165-396 |
| Cow position: | chr1:85058784-85058554 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 97 |
| Conread position: | 165-396 |
| Cow position: | chr1:89080889-89081119 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr1:93443498-93443732 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 165-398 |
| Cow position: | chr1:15123472-15123703 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 165-398 |
| Cow position: | chr1:62401747-62401515 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-398 |
| Cow position: | chr1:94026703-94026939 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 123, 76 |
| Conread position: | 165-401 |
| Cow position: | chr1:42167447-42167218 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 183 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 151, 93 |
| Conread position: | 165-401 |
| Cow position: | chr1:62445173-62444938 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-401 |
| Cow position: | chr1:85847553-85847331 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 155, 58 |
| Conread position: | 165-408 |
| Cow position: | chr1:99824772-99825030 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 46, 111 |
| Conread position: | 165-427 |
| Cow position: | chr1:83146748-83146486 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 96 |
| Conread position: | 165-503 |
| Cow position: | chr1:87120524-87120862 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 93 |
| Conread position: | 165-650 |
| Cow position: | chr1:80624708-80624235 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 23 |
| Conread position: | 165-655 |
| Cow position: | chr1:96088613-96089106 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 45 |
| Conread position: | 166-331 |
| Cow position: | chr1:34356997-34356833 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 152, 92 |
| Conread position: | 167-359 |
| Cow position: | chr1:13557939-13558130 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 157 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 151, 91 |
| Conread position: | 167-393 |
| Cow position: | chr1:64757073-64757295 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 167-395 |
| Cow position: | chr1:8046440-8046660 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 91 |
| Conread position: | 167-396 |
| Cow position: | chr1:67850746-67850518 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 91 |
| Conread position: | 167-650 |
| Cow position: | chr1:38110371-38110850 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 46 |
| Conread position: | 176-500 |
| Cow position: | chr1:94347143-94346818 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 83, 75 |
| Conread position: | 177-396 |
| Cow position: | chr1:15197309-15197526 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 179-398 |
| Cow position: | chr1:21817724-21817509 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 66 |
| Conread position: | 184-396 |
| Cow position: | chr1:19974844-19974632 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 106, 74 |
| Conread position: | 189-399 |
| Cow position: | chr1:75439943-75440147 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 129, 69 |
| Conread position: | 190-500 |
| Cow position: | chr1:82664128-82663816 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 68 |
| Conread position: | 192-396 |
| Cow position: | chr1:58203979-58203776 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 131, 70 |
| Conread position: | 203-363 |
| Cow position: | chr1:4313107-4313264 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 115, 39 |
| Conread position: | 210-422 |
| Cow position: | chr1:94765614-94765401 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 108, 51 |
| Conread position: | 223-447 |
| Cow position: | chr1:8149191-8148974 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 95, 38 |
| Conread position: | 230-656 |
| Cow position: | chr1:67968297-67967835 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 36 |
| Conread position: | 251-655 |
| Cow position: | chr1:41182640-41182214 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 10 |
| Conread position: | 259-396 |
| Cow position: | chr1:6314523-6314385 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 259-396 |
| Cow position: | chr1:62039698-62039836 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 261-398 |
| Cow position: | chr1:9711595-9711733 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 432-597 |
| Cow position: | chr1:3446069-3445898 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 0 |
Show alignments to all cow chromosomes.