Cow genome map
| Conread name: | Thy1-THY010074B02 |
| Conread position: | 65-494 |
| Cow position: | chr11:8383157-8383557 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 304 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 40, 69 |
| Conread position: | 123-638 |
| Cow position: | chr11:75071344-75070837 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 131-396 |
| Cow position: | chr11:31605704-31605951 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 18, 32 |
| Conread position: | 151-396 |
| Cow position: | chr11:57378719-57378484 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 188 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 167, 107 |
| Conread position: | 157-405 |
| Cow position: | chr11:13919661-13919417 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 161, 43 |
| Conread position: | 158-396 |
| Cow position: | chr11:56828300-56828536 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 142, 9 |
| Conread position: | 158-637 |
| Cow position: | chr11:38545386-38544928 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 336 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 11, 101 |
| Conread position: | 158-651 |
| Cow position: | chr11:77553701-77554179 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 5 |
| Conread position: | 160-422 |
| Cow position: | chr11:46872638-46872903 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 103 |
| Conread position: | 160-425 |
| Cow position: | chr11:82378056-82377785 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 153, 98 |
| Conread position: | 162-506 |
| Cow position: | chr11:26137301-26137636 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 21 |
| Conread position: | 163-303 |
| Cow position: | chr11:16828159-16828021 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 163-396 |
| Cow position: | chr11:13615976-13616208 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 95 |
| Conread position: | 163-396 |
| Cow position: | chr11:18923367-18923137 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 183 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 19, 89 |
| Conread position: | 163-396 |
| Cow position: | chr11:35534104-35534331 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 20 |
| Conread position: | 163-396 |
| Cow position: | chr11:56514338-56514107 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 95 |
| Conread position: | 163-398 |
| Cow position: | chr11:36263810-36263573 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 153, 43 |
| Conread position: | 163-401 |
| Cow position: | chr11:63272675-63272450 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 36, 100 |
| Conread position: | 164-337 |
| Cow position: | chr11:42758312-42758484 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-382 |
| Cow position: | chr11:68243665-68243877 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-384 |
| Cow position: | chr11:8656834-8656616 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 173 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 41, 85 |
| Conread position: | 164-395 |
| Cow position: | chr11:65816591-65816361 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-396 |
| Cow position: | chr11:1631354-1631585 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 86 |
| Conread position: | 164-396 |
| Cow position: | chr11:1639624-1639854 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 86 |
| Conread position: | 164-396 |
| Cow position: | chr11:16790879-16790650 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 74 |
| Conread position: | 164-396 |
| Cow position: | chr11:32079614-32079845 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-396 |
| Cow position: | chr11:39996481-39996700 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 164-396 |
| Cow position: | chr11:63150208-63150439 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 119, 94 |
| Conread position: | 164-399 |
| Cow position: | chr11:48799488-48799721 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 94 |
| Conread position: | 164-405 |
| Cow position: | chr11:7055844-7056081 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 77 |
| Conread position: | 164-422 |
| Cow position: | chr11:35577988-35578233 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 154, 17 |
| Conread position: | 164-650 |
| Cow position: | chr11:19830488-19830971 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 99 |
| Conread position: | 165-274 |
| Cow position: | chr11:16296761-16296868 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 165-302 |
| Cow position: | chr11:73326434-73326569 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 108, 56 |
| Conread position: | 165-341 |
| Cow position: | chr11:24916483-24916314 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 165-343 |
| Cow position: | chr11:3807158-3806981 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-359 |
| Cow position: | chr11:10369177-10369367 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 156 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 153, 76 |
| Conread position: | 165-385 |
| Cow position: | chr11:21164054-21164273 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-389 |
| Cow position: | chr11:61619016-61618796 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 165-392 |
| Cow position: | chr11:31440660-31440886 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-392 |
| Cow position: | chr11:70057494-70057720 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr11:15303206-15303434 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 84 |
| Conread position: | 165-396 |
| Cow position: | chr11:18187855-18188085 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr11:30530394-30530164 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr11:32266148-32266378 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr11:48721588-48721817 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 165-396 |
| Cow position: | chr11:64037438-64037208 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 93 |
| Conread position: | 165-396 |
| Cow position: | chr11:65815025-65814795 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-398 |
| Cow position: | chr11:2682205-2682436 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-398 |
| Cow position: | chr11:5533961-5534188 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-398 |
| Cow position: | chr11:15423095-15422864 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-500 |
| Cow position: | chr11:31720137-31720465 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 18 |
| Conread position: | 165-501 |
| Cow position: | chr11:37326604-37326943 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-641 |
| Cow position: | chr11:8097322-8097805 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-641 |
| Cow position: | chr11:76395413-76394949 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 97 |
| Conread position: | 166-410 |
| Cow position: | chr11:61224947-61224708 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 46 |
| Conread position: | 167-396 |
| Cow position: | chr11:33942071-33942299 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 12, 93 |
| Conread position: | 167-396 |
| Cow position: | chr11:72539058-72538831 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 34 |
| Conread position: | 167-405 |
| Cow position: | chr11:40003544-40003777 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 180 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 171-396 |
| Cow position: | chr11:19222341-19222117 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 87 |
| Conread position: | 171-398 |
| Cow position: | chr11:53681037-53680811 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 148, 87 |
| Conread position: | 174-505 |
| Cow position: | chr11:40495675-40496004 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 89 |
| Conread position: | 203-396 |
| Cow position: | chr11:65837754-65837561 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 16, 59 |
| Conread position: | 209-505 |
| Cow position: | chr11:18621566-18621864 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 53 |
| Conread position: | 213-396 |
| Cow position: | chr11:18183272-18183090 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 105, 48 |
| Conread position: | 218-422 |
| Cow position: | chr11:34807801-34807596 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 102, 43 |
Show alignments to all cow chromosomes.