Cow genome map
| Conread name: | Thy1-THY010074B02 |
| Conread position: | 151-396 |
| Cow position: | chr15:28617536-28617297 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 167, 107 |
| Conread position: | 155-396 |
| Cow position: | chr15:18626604-18626364 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 103 |
| Conread position: | 159-396 |
| Cow position: | chr15:40814187-40813952 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 99 |
| Conread position: | 160-399 |
| Cow position: | chr15:5086835-5086597 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 98 |
| Conread position: | 161-422 |
| Cow position: | chr15:27276144-27275883 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 36 |
| Conread position: | 163-396 |
| Cow position: | chr15:9345848-9345620 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 72 |
| Conread position: | 163-396 |
| Cow position: | chr15:18249167-18248934 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 95 |
| Conread position: | 163-398 |
| Cow position: | chr15:44592054-44592291 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 99 |
| Conread position: | 163-586 |
| Cow position: | chr15:22871879-22872293 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 93 |
| Conread position: | 163-654 |
| Cow position: | chr15:37048826-37049310 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 342 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 248, 20 |
| Conread position: | 164-309 |
| Cow position: | chr15:32442988-32443130 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 164-316 |
| Cow position: | chr15:25169835-25169687 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 164-389 |
| Cow position: | chr15:44645176-44644959 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 154, 18 |
| Conread position: | 164-396 |
| Cow position: | chr15:20133873-20134101 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-396 |
| Cow position: | chr15:42654483-42654714 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-398 |
| Cow position: | chr15:22979381-22979149 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 97 |
| Conread position: | 164-398 |
| Cow position: | chr15:32450799-32451030 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 83 |
| Conread position: | 164-399 |
| Cow position: | chr15:34201329-34201096 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 30 |
| Conread position: | 164-399 |
| Cow position: | chr15:51316745-51316511 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-408 |
| Cow position: | chr15:10408279-10408036 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 95 |
| Conread position: | 164-408 |
| Cow position: | chr15:17220355-17220597 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 187 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 40, 24 |
| Conread position: | 164-638 |
| Cow position: | chr15:1854615-1854143 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 92, 27 |
| Conread position: | 164-655 |
| Cow position: | chr15:234919-235400 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 68 |
| Conread position: | 165-293 |
| Cow position: | chr15:38616940-38617066 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 165-378 |
| Cow position: | chr15:14189089-14188881 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 165-396 |
| Cow position: | chr15:316127-316357 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr15:15372777-15373008 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 97 |
| Conread position: | 165-396 |
| Cow position: | chr15:17293479-17293258 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr15:26614541-26614311 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 93 |
| Conread position: | 165-396 |
| Cow position: | chr15:39716231-39716461 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr15:40569270-40569500 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr15:45870016-45870246 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-398 |
| Cow position: | chr15:767342-767098 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 191 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 56, 108 |
| Conread position: | 165-398 |
| Cow position: | chr15:6290273-6290040 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 93 |
| Conread position: | 165-398 |
| Cow position: | chr15:29310901-29311131 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-398 |
| Cow position: | chr15:38621637-38621413 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-408 |
| Cow position: | chr15:11729672-11729429 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 91 |
| Conread position: | 165-422 |
| Cow position: | chr15:20344058-20344315 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 97 |
| Conread position: | 165-505 |
| Cow position: | chr15:12826303-12826628 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 244 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 106, 93 |
| Conread position: | 165-505 |
| Cow position: | chr15:22578847-22578521 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-650 |
| Cow position: | chr15:15887272-15887746 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 332 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 138, 96 |
| Conread position: | 166-422 |
| Cow position: | chr15:47152880-47152630 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 89 |
| Conread position: | 167-328 |
| Cow position: | chr15:36862806-36862646 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 151, 91 |
| Conread position: | 167-422 |
| Cow position: | chr15:22485014-22485258 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 151, 30 |
| Conread position: | 167-648 |
| Cow position: | chr15:6185012-6185499 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 92 |
| Conread position: | 167-656 |
| Cow position: | chr15:45005826-45005333 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 91 |
| Conread position: | 168-408 |
| Cow position: | chr15:1241730-1241503 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 187 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 150, 90 |
| Conread position: | 172-422 |
| Cow position: | chr15:28063314-28063065 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 76 |
| Conread position: | 174-408 |
| Cow position: | chr15:1234374-1234153 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 144, 84 |
| Conread position: | 175-320 |
| Cow position: | chr15:12773769-12773626 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 175-505 |
| Cow position: | chr15:45997029-45996697 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 83 |
| Conread position: | 175-651 |
| Cow position: | chr15:1993482-1992993 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 72 |
| Conread position: | 176-401 |
| Cow position: | chr15:20126966-20127190 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 82 |
| Conread position: | 177-578 |
| Cow position: | chr15:24539650-24539240 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 85 |
| Conread position: | 178-396 |
| Cow position: | chr15:34165074-34164857 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 139, 80 |
| Conread position: | 183-396 |
| Cow position: | chr15:33484287-33484075 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 15, 50 |
| Conread position: | 183-655 |
| Cow position: | chr15:25072330-25071854 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 34 |
| Conread position: | 185-504 |
| Cow position: | chr15:601491-601799 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 135, 51 |
| Conread position: | 186-505 |
| Cow position: | chr15:20450676-20450993 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 72 |
| Conread position: | 202-396 |
| Cow position: | chr15:12687508-12687701 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 59 |
| Conread position: | 260-398 |
| Cow position: | chr15:15263613-15263752 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 62, 111 |
| Conread position: | 274-395 |
| Cow position: | chr15:15137182-15137304 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 358-655 |
| Cow position: | chr15:14188671-14188360 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 93, 70 |
Show alignments to all cow chromosomes.