Cow genome map
| Conread name: | Thy1-THY010074B02 |
| Conread position: | 145-396 |
| Cow position: | chr17:6528450-6528200 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 9 |
| Conread position: | 158-395 |
| Cow position: | chr17:23804477-23804240 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 101 |
| Conread position: | 160-382 |
| Cow position: | chr17:22841501-22841282 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 160, 72 |
| Conread position: | 160-396 |
| Cow position: | chr17:24860727-24860957 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 99 |
| Conread position: | 160-398 |
| Cow position: | chr17:21649535-21649298 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 98 |
| Conread position: | 162-422 |
| Cow position: | chr17:35885024-35884761 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 95 |
| Conread position: | 163-394 |
| Cow position: | chr17:6369339-6369110 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 95 |
| Conread position: | 163-396 |
| Cow position: | chr17:3353783-3353551 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 95 |
| Conread position: | 163-396 |
| Cow position: | chr17:17776276-17776044 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 95 |
| Conread position: | 163-497 |
| Cow position: | chr17:13633640-13633955 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 163-650 |
| Cow position: | chr17:34958281-34957772 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 17 |
| Conread position: | 164-318 |
| Cow position: | chr17:17271139-17270987 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 133 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 164-338 |
| Cow position: | chr17:1659015-1659188 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 145 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-396 |
| Cow position: | chr17:7837136-7837361 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-396 |
| Cow position: | chr17:19125833-19126064 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-396 |
| Cow position: | chr17:21618985-21619216 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-396 |
| Cow position: | chr17:28815307-28815538 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-396 |
| Cow position: | chr17:36655580-36655357 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 178 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 153, 91 |
| Conread position: | 164-650 |
| Cow position: | chr17:24583816-24583335 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 17 |
| Conread position: | 165-336 |
| Cow position: | chr17:10198527-10198697 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 142 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-356 |
| Cow position: | chr17:3398765-3398577 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 115, 93 |
| Conread position: | 165-388 |
| Cow position: | chr17:1915842-1916064 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 96 |
| Conread position: | 165-395 |
| Cow position: | chr17:1193072-1192844 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-395 |
| Cow position: | chr17:24989602-24989374 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr17:5774295-5774522 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 72 |
| Conread position: | 165-396 |
| Cow position: | chr17:12960070-12959840 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 91 |
| Conread position: | 165-396 |
| Cow position: | chr17:23829867-23829637 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr17:25148568-25148797 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 11 |
| Conread position: | 165-396 |
| Cow position: | chr17:27786359-27786128 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 93 |
| Conread position: | 165-396 |
| Cow position: | chr17:28810030-28810258 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr17:36071414-36071644 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 97 |
| Conread position: | 165-396 |
| Cow position: | chr17:37352706-37352932 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 97 |
| Conread position: | 165-396 |
| Cow position: | chr17:38868790-38868560 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr17:40682389-40682619 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr17:40870671-40870457 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 155, 80 |
| Conread position: | 165-398 |
| Cow position: | chr17:13267297-13267069 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 83 |
| Conread position: | 165-398 |
| Cow position: | chr17:18462113-18462352 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 7, 73 |
| Conread position: | 165-399 |
| Cow position: | chr17:23459857-23460090 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-505 |
| Cow position: | chr17:1034250-1033914 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 100 |
| Conread position: | 166-348 |
| Cow position: | chr17:4874101-4874282 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 152 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 152, 92 |
| Conread position: | 166-422 |
| Cow position: | chr17:21386323-21386564 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 68, 46 |
| Conread position: | 167-397 |
| Cow position: | chr17:590000-590225 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 150, 35 |
| Conread position: | 168-394 |
| Cow position: | chr17:2466598-2466822 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 149, 90 |
| Conread position: | 175-505 |
| Cow position: | chr17:38599292-38598974 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 112, 26 |
| Conread position: | 178-656 |
| Cow position: | chr17:21568296-21567800 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 81 |
| Conread position: | 184-499 |
| Cow position: | chr17:3967206-3966894 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 77 |
| Conread position: | 184-659 |
| Cow position: | chr17:6102799-6102326 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 13 |
| Conread position: | 197-392 |
| Cow position: | chr17:4555414-4555220 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 157 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 121, 64 |
| Conread position: | 201-396 |
| Cow position: | chr17:21383206-21383398 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 119, 21 |
| Conread position: | 231-505 |
| Cow position: | chr17:8299167-8298904 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 207 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 87, 30 |
| Conread position: | 241-399 |
| Cow position: | chr17:21041645-21041489 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 79, 20 |
| Conread position: | 259-422 |
| Cow position: | chr17:12587628-12587793 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 59, 93 |
Show alignments to all cow chromosomes.