Cow genome map
| Conread name: | Thy1-THY010074B02 |
| Conread position: | 144-396 |
| Cow position: | chr2:45558239-45557997 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 28, 19 |
| Conread position: | 152-390 |
| Cow position: | chr2:36621975-36621743 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 43, 8 |
| Conread position: | 154-396 |
| Cow position: | chr2:41630370-41630128 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 105 |
| Conread position: | 155-345 |
| Cow position: | chr2:5513568-5513383 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 156-396 |
| Cow position: | chr2:82290325-82290562 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 7 |
| Conread position: | 159-422 |
| Cow position: | chr2:44506819-44507084 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 100 |
| Conread position: | 160-363 |
| Cow position: | chr2:74690826-74691028 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 98 |
| Conread position: | 160-396 |
| Cow position: | chr2:80565598-80565826 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 180 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 161-395 |
| Cow position: | chr2:58852944-58853179 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 97 |
| Conread position: | 161-547 |
| Cow position: | chr2:85328366-85328740 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 8 |
| Conread position: | 163-396 |
| Cow position: | chr2:7547221-7546991 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 47 |
| Conread position: | 163-396 |
| Cow position: | chr2:46774815-46775047 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 95 |
| Conread position: | 163-398 |
| Cow position: | chr2:21890406-21890640 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 95 |
| Conread position: | 163-408 |
| Cow position: | chr2:74691238-74691480 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 79 |
| Conread position: | 163-649 |
| Cow position: | chr2:56316778-56317264 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 61 |
| Conread position: | 164-328 |
| Cow position: | chr2:31893936-31894099 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 139 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-360 |
| Cow position: | chr2:44415606-44415799 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 86, 95 |
| Conread position: | 164-382 |
| Cow position: | chr2:37756277-37756493 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 149, 94 |
| Conread position: | 164-389 |
| Cow position: | chr2:3484336-3484561 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 76, 103 |
| Conread position: | 164-396 |
| Cow position: | chr2:46767019-46766788 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-396 |
| Cow position: | chr2:52373419-52373649 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-396 |
| Cow position: | chr2:64659740-64659509 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-398 |
| Cow position: | chr2:16807990-16808223 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-401 |
| Cow position: | chr2:26527447-26527206 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 94 |
| Conread position: | 164-408 |
| Cow position: | chr2:36586529-36586772 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-500 |
| Cow position: | chr2:21635895-21636225 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 92 |
| Conread position: | 164-601 |
| Cow position: | chr2:1633232-1632801 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 101 |
| Conread position: | 165-318 |
| Cow position: | chr2:57980090-57979942 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 165-375 |
| Cow position: | chr2:40413205-40413414 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-375 |
| Cow position: | chr2:57984246-57984452 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 165-393 |
| Cow position: | chr2:36857479-36857703 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 23, 32 |
| Conread position: | 165-394 |
| Cow position: | chr2:55826005-55825778 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 97 |
| Conread position: | 165-395 |
| Cow position: | chr2:39753143-39753372 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr2:7295273-7295043 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr2:11882154-11881926 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 148, 49 |
| Conread position: | 165-396 |
| Cow position: | chr2:16797997-16798227 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr2:30930634-30930403 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 94 |
| Conread position: | 165-396 |
| Cow position: | chr2:32227372-32227601 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 93 |
| Conread position: | 165-396 |
| Cow position: | chr2:37171033-37170803 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr2:46774497-46774266 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 94 |
| Conread position: | 165-396 |
| Cow position: | chr2:47840166-47839936 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr2:48511901-48512130 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr2:52328703-52328936 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 98 |
| Conread position: | 165-396 |
| Cow position: | chr2:58342686-58342915 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 16 |
| Conread position: | 165-396 |
| Cow position: | chr2:65682713-65682944 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr2:66701506-66701276 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr2:70651826-70651603 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr2:77921502-77921732 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr2:86168865-86169093 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-403 |
| Cow position: | chr2:80585960-80585725 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 16 |
| Conread position: | 165-405 |
| Cow position: | chr2:76038889-76039132 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 153, 72 |
| Conread position: | 165-418 |
| Cow position: | chr2:66060354-66060104 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 153, 76 |
| Conread position: | 165-499 |
| Cow position: | chr2:63086801-63087111 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 293, 84 |
| Conread position: | 165-641 |
| Cow position: | chr2:25245016-25245483 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 97 |
| Conread position: | 166-398 |
| Cow position: | chr2:80147531-80147762 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 92 |
| Conread position: | 166-419 |
| Cow position: | chr2:61219847-61219600 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 152, 88 |
| Conread position: | 166-425 |
| Cow position: | chr2:9019766-9020023 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 152, 24 |
| Conread position: | 167-396 |
| Cow position: | chr2:47571898-47571670 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 91 |
| Conread position: | 167-401 |
| Cow position: | chr2:18160189-18160421 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 47 |
| Conread position: | 168-394 |
| Cow position: | chr2:596528-596752 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 149, 90 |
| Conread position: | 168-650 |
| Cow position: | chr2:58697341-58697820 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 15 |
| Conread position: | 170-636 |
| Cow position: | chr2:75069257-75068775 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 91 |
| Conread position: | 171-396 |
| Cow position: | chr2:68157393-68157171 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 70 |
| Conread position: | 171-422 |
| Cow position: | chr2:46025939-46026188 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 87 |
| Conread position: | 173-505 |
| Cow position: | chr2:62460924-62461250 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 10 |
| Conread position: | 174-396 |
| Cow position: | chr2:74229874-74230095 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 84 |
| Conread position: | 174-506 |
| Cow position: | chr2:28587369-28587684 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 57 |
| Conread position: | 176-401 |
| Cow position: | chr2:11252134-11252355 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 72 |
| Conread position: | 177-316 |
| Cow position: | chr2:80094382-80094246 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 97, 81 |
| Conread position: | 186-658 |
| Cow position: | chr2:35400488-35400005 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 20 |
| Conread position: | 203-396 |
| Cow position: | chr2:55287186-55287378 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 58 |
| Conread position: | 204-422 |
| Cow position: | chr2:68958599-68958816 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 57 |
| Conread position: | 234-396 |
| Cow position: | chr2:19148459-19148620 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 86, 27 |
| Conread position: | 273-528 |
| Cow position: | chr2:24812825-24812580 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 187, 49 |
| Conread position: | 287-427 |
| Cow position: | chr2:57979686-57979543 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 32, 136 |
| Conread position: | 318-500 |
| Cow position: | chr2:30688478-30688298 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 131, 42 |
Show alignments to all cow chromosomes.