Cow genome map
| Conread name: | Thy1-THY010074B02 |
| Conread position: | 154-382 |
| Cow position: | chr25:3739119-3738903 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 157-396 |
| Cow position: | chr25:12244051-12244290 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 102 |
| Conread position: | 159-396 |
| Cow position: | chr25:34038634-34038869 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 36 |
| Conread position: | 161-410 |
| Cow position: | chr25:3630766-3631014 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 68 |
| Conread position: | 162-396 |
| Cow position: | chr25:13675037-13674805 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 96 |
| Conread position: | 162-396 |
| Cow position: | chr25:23600168-23600401 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 96 |
| Conread position: | 162-398 |
| Cow position: | chr25:21141295-21141061 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 96 |
| Conread position: | 163-408 |
| Cow position: | chr25:13714305-13714061 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 95 |
| Conread position: | 163-625 |
| Cow position: | chr25:8623945-8624411 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 93 |
| Conread position: | 163-641 |
| Cow position: | chr25:6879645-6879176 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 100 |
| Conread position: | 163-656 |
| Cow position: | chr25:21133333-21132850 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 97 |
| Conread position: | 164-394 |
| Cow position: | chr25:6276227-6275998 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-398 |
| Cow position: | chr25:10152645-10152410 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 95 |
| Conread position: | 164-401 |
| Cow position: | chr25:4617026-4617264 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 164-420 |
| Cow position: | chr25:4624842-4625101 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-505 |
| Cow position: | chr25:14532909-14532588 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 94 |
| Conread position: | 164-635 |
| Cow position: | chr25:12664565-12664106 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 165-302 |
| Cow position: | chr25:1100198-1100064 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 60, 82 |
| Conread position: | 165-314 |
| Cow position: | chr25:34764294-34764441 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 165-385 |
| Cow position: | chr25:7771344-7771124 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 99 |
| Conread position: | 165-396 |
| Cow position: | chr25:6808306-6808536 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr25:7221466-7221242 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 94 |
| Conread position: | 165-396 |
| Cow position: | chr25:10339258-10339486 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 91 |
| Conread position: | 165-396 |
| Cow position: | chr25:11650730-11650960 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr25:12250166-12250396 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr25:14532491-14532261 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr25:20051626-20051396 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr25:20259266-20259040 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 153, 39 |
| Conread position: | 165-396 |
| Cow position: | chr25:21519074-21518844 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr25:22814162-22814390 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 62 |
| Conread position: | 165-396 |
| Cow position: | chr25:30473883-30473653 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr25:34686058-34686280 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 151, 93 |
| Conread position: | 165-396 |
| Cow position: | chr25:36156962-36156732 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr25:41131492-41131262 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 90 |
| Conread position: | 165-410 |
| Cow position: | chr25:18443378-18443626 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 97 |
| Conread position: | 165-637 |
| Cow position: | chr25:18307995-18307515 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 329 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 146, 93 |
| Conread position: | 165-641 |
| Cow position: | chr25:17372980-17373461 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-655 |
| Cow position: | chr25:5202296-5202812 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 98 |
| Conread position: | 166-396 |
| Cow position: | chr25:32751389-32751615 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 37 |
| Conread position: | 166-398 |
| Cow position: | chr25:31979488-31979714 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 167-309 |
| Cow position: | chr25:37620193-37620052 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 13, 90 |
| Conread position: | 167-396 |
| Cow position: | chr25:29251741-29251508 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 91 |
| Conread position: | 167-396 |
| Cow position: | chr25:32677040-32677268 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 91 |
| Conread position: | 171-399 |
| Cow position: | chr25:41238328-41238106 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 41 |
| Conread position: | 171-461 |
| Cow position: | chr25:10726650-10726934 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 93 |
| Conread position: | 183-396 |
| Cow position: | chr25:11266317-11266103 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 75 |
| Conread position: | 185-656 |
| Cow position: | chr25:6918636-6918162 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 73 |
| Conread position: | 192-396 |
| Cow position: | chr25:7509062-7509262 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 101, 74 |
| Conread position: | 206-389 |
| Cow position: | chr25:5776796-5776976 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 112, 26 |
| Conread position: | 212-655 |
| Cow position: | chr25:15477099-15477539 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 310 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 199, 49 |
| Conread position: | 214-492 |
| Cow position: | chr25:7489754-7489488 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 267-392 |
| Cow position: | chr25:16134871-16134997 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 367-555 |
| Cow position: | chr25:37620048-37619858 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 86, 64 |
Show alignments to all cow chromosomes.