Cow genome map

Conread name: Thy1-THY010074B02

Conread position: 123-349
Cow position: chr3:78209466-78209692 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 176
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 39, 136

Conread position: 146-324
Cow position: chr3:19206034-19205858 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 21, 45

Conread position: 150-396
Cow position: chr3:6047133-6046886 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 13

Conread position: 155-396
Cow position: chr3:26611928-26611690 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 105

Conread position: 156-650
Cow position: chr3:84917768-84917282 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 40

Conread position: 156-652
Cow position: chr3:1466306-1465820 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 46

Conread position: 158-396
Cow position: chr3:2469845-2470082 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 100

Conread position: 159-284
Cow position: chr3:5425459-5425583 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 105
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 7, 100

Conread position: 160-373
Cow position: chr3:30766363-30766574 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 167
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 7, 23

Conread position: 160-396
Cow position: chr3:55263954-55263719 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 98

Conread position: 160-480
Cow position: chr3:22665273-22665594 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 97

Conread position: 161-396
Cow position: chr3:27866332-27866097 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 98

Conread position: 162-397
Cow position: chr3:57722891-57722664 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 34

Conread position: 162-398
Cow position: chr3:11713428-11713194 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 82

Conread position: 162-422
Cow position: chr3:2409883-2409621 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 97

Conread position: 163-391
Cow position: chr3:6462552-6462789 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 187
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 155, 18

Conread position: 163-396
Cow position: chr3:7864080-7864312 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 95

Conread position: 163-396
Cow position: chr3:7866252-7866020 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 95

Conread position: 163-396
Cow position: chr3:42333099-42333322 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 54

Conread position: 163-398
Cow position: chr3:51795882-51796118 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 93

Conread position: 164-318
Cow position: chr3:19201186-19201342 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 129
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 128, 94

Conread position: 164-328
Cow position: chr3:10228987-10229150 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 133
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 154, 94

Conread position: 164-375
Cow position: chr3:24769390-24769183 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 73

Conread position: 164-394
Cow position: chr3:29708156-29708384 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 17

Conread position: 164-396
Cow position: chr3:8810286-8810058 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 74

Conread position: 164-396
Cow position: chr3:25086461-25086237 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 164-396
Cow position: chr3:25718692-25718464 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 74

Conread position: 164-396
Cow position: chr3:45835325-45835094 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 94

Conread position: 164-396
Cow position: chr3:64509646-64509415 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 94

Conread position: 164-396
Cow position: chr3:78502033-78501802 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 97

Conread position: 164-399
Cow position: chr3:5451564-5451334 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 95

Conread position: 164-410
Cow position: chr3:45840552-45840308 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 94

Conread position: 164-650
Cow position: chr3:10132120-10131639 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 19

Conread position: 165-289
Cow position: chr3:16984705-16984585 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 72, 0

Conread position: 165-314
Cow position: chr3:2470341-2470197 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 125
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 84, 0

Conread position: 165-385
Cow position: chr3:13009271-13009488 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 35

Conread position: 165-396
Cow position: chr3:7020389-7020618 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 93

Conread position: 165-396
Cow position: chr3:19115436-19115662 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 94

Conread position: 165-396
Cow position: chr3:19206636-19206412 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 181
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 22, 94

Conread position: 165-396
Cow position: chr3:28466463-28466694 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 93

Conread position: 165-396
Cow position: chr3:30994073-30993846 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 96

Conread position: 165-396
Cow position: chr3:34170749-34170528 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 93

Conread position: 165-396
Cow position: chr3:45935324-45935554 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 93

Conread position: 165-396
Cow position: chr3:52683552-52683322 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 93

Conread position: 165-396
Cow position: chr3:53803112-53802890 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 165-396
Cow position: chr3:62737581-62737351 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 93

Conread position: 165-396
Cow position: chr3:69037236-69037006 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 93

Conread position: 165-396
Cow position: chr3:71012549-71012320 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 180
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 19, 98

Conread position: 165-396
Cow position: chr3:76509539-76509769 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 93

Conread position: 165-398
Cow position: chr3:3250634-3250401 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 177
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 153, 93

Conread position: 165-398
Cow position: chr3:22885273-22885503 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 16

Conread position: 165-398
Cow position: chr3:56969061-56969286 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 181
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 153, 93

Conread position: 165-399
Cow position: chr3:24812523-24812291 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 16

Conread position: 165-401
Cow position: chr3:11243956-11243721 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 93

Conread position: 165-401
Cow position: chr3:14728797-14729030 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 93

Conread position: 165-405
Cow position: chr3:15057169-15056930 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 94

Conread position: 165-405
Cow position: chr3:32682528-32682764 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 165-408
Cow position: chr3:60091259-60091016 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 91

Conread position: 165-422
Cow position: chr3:51094439-51094691 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 182
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 155, 67

Conread position: 165-430
Cow position: chr3:7530718-7530451 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 91

Conread position: 165-637
Cow position: chr3:52711128-52711589 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 96

Conread position: 165-652
Cow position: chr3:35249030-35249516 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 59

Conread position: 165-655
Cow position: chr3:26607251-26607744 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 97

Conread position: 165-667
Cow position: chr3:5452502-5452012 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 90

Conread position: 166-396
Cow position: chr3:7829544-7829326 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 176
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 39, 17

Conread position: 166-396
Cow position: chr3:75163897-75163675 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 179
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 154, 92

Conread position: 166-396
Cow position: chr3:80440797-80441026 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 92

Conread position: 166-410
Cow position: chr3:19474864-19474621 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 32

Conread position: 167-396
Cow position: chr3:64111674-64111449 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 91

Conread position: 167-651
Cow position: chr3:34562625-34562140 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 95

Conread position: 168-422
Cow position: chr3:78788757-78789012 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 94

Conread position: 171-447
Cow position: chr3:61963826-61963562 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 207
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 20, 88

Conread position: 172-389
Cow position: chr3:23831006-23830796 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 86

Conread position: 172-657
Cow position: chr3:13613396-13613867 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 28

Conread position: 174-396
Cow position: chr3:38529543-38529764 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 84

Conread position: 175-296
Cow position: chr3:20353283-20353165 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 76, 0

Conread position: 177-494
Cow position: chr3:8008930-8008616 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 52

Conread position: 177-641
Cow position: chr3:81350283-81349831 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 84

Conread position: 180-485
Cow position: chr3:60064448-60064743 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 73

Conread position: 186-396
Cow position: chr3:38280424-38280633 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 72

Conread position: 188-661
Cow position: chr3:2445802-2446268 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 73

Conread position: 203-447
Cow position: chr3:81827504-81827749 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 58

Conread position: 203-656
Cow position: chr3:83331267-83331721 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 310
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 115, 58

Conread position: 246-394
Cow position: chr3:74477172-74477025 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 122
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 72, 15

Conread position: 267-396
Cow position: chr3:2481891-2482021 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 268-655
Cow position: chr3:49874158-49873781 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 272
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 50, 26

Show alignments to all cow chromosomes.