Cow genome map
| Conread name: | Thy1-THY010074B02 |
| Conread position: | 123-349 |
| Cow position: | chr3:78209466-78209692 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 39, 136 |
| Conread position: | 146-324 |
| Cow position: | chr3:19206034-19205858 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 21, 45 |
| Conread position: | 150-396 |
| Cow position: | chr3:6047133-6046886 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 13 |
| Conread position: | 155-396 |
| Cow position: | chr3:26611928-26611690 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 105 |
| Conread position: | 156-650 |
| Cow position: | chr3:84917768-84917282 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 40 |
| Conread position: | 156-652 |
| Cow position: | chr3:1466306-1465820 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 46 |
| Conread position: | 158-396 |
| Cow position: | chr3:2469845-2470082 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 100 |
| Conread position: | 159-284 |
| Cow position: | chr3:5425459-5425583 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 7, 100 |
| Conread position: | 160-373 |
| Cow position: | chr3:30766363-30766574 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 160-396 |
| Cow position: | chr3:55263954-55263719 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 98 |
| Conread position: | 160-480 |
| Cow position: | chr3:22665273-22665594 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 97 |
| Conread position: | 161-396 |
| Cow position: | chr3:27866332-27866097 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 98 |
| Conread position: | 162-397 |
| Cow position: | chr3:57722891-57722664 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 34 |
| Conread position: | 162-398 |
| Cow position: | chr3:11713428-11713194 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 82 |
| Conread position: | 162-422 |
| Cow position: | chr3:2409883-2409621 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 97 |
| Conread position: | 163-391 |
| Cow position: | chr3:6462552-6462789 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 155, 18 |
| Conread position: | 163-396 |
| Cow position: | chr3:7864080-7864312 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 95 |
| Conread position: | 163-396 |
| Cow position: | chr3:7866252-7866020 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 95 |
| Conread position: | 163-396 |
| Cow position: | chr3:42333099-42333322 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 54 |
| Conread position: | 163-398 |
| Cow position: | chr3:51795882-51796118 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 93 |
| Conread position: | 164-318 |
| Cow position: | chr3:19201186-19201342 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 128, 94 |
| Conread position: | 164-328 |
| Cow position: | chr3:10228987-10229150 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-375 |
| Cow position: | chr3:24769390-24769183 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 73 |
| Conread position: | 164-394 |
| Cow position: | chr3:29708156-29708384 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 17 |
| Conread position: | 164-396 |
| Cow position: | chr3:8810286-8810058 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 74 |
| Conread position: | 164-396 |
| Cow position: | chr3:25086461-25086237 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 164-396 |
| Cow position: | chr3:25718692-25718464 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 74 |
| Conread position: | 164-396 |
| Cow position: | chr3:45835325-45835094 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-396 |
| Cow position: | chr3:64509646-64509415 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-396 |
| Cow position: | chr3:78502033-78501802 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 97 |
| Conread position: | 164-399 |
| Cow position: | chr3:5451564-5451334 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 95 |
| Conread position: | 164-410 |
| Cow position: | chr3:45840552-45840308 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-650 |
| Cow position: | chr3:10132120-10131639 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 19 |
| Conread position: | 165-289 |
| Cow position: | chr3:16984705-16984585 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 165-314 |
| Cow position: | chr3:2470341-2470197 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 165-385 |
| Cow position: | chr3:13009271-13009488 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 35 |
| Conread position: | 165-396 |
| Cow position: | chr3:7020389-7020618 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr3:19115436-19115662 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 94 |
| Conread position: | 165-396 |
| Cow position: | chr3:19206636-19206412 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 181 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 22, 94 |
| Conread position: | 165-396 |
| Cow position: | chr3:28466463-28466694 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 93 |
| Conread position: | 165-396 |
| Cow position: | chr3:30994073-30993846 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 96 |
| Conread position: | 165-396 |
| Cow position: | chr3:34170749-34170528 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr3:45935324-45935554 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr3:52683552-52683322 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr3:53803112-53802890 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 165-396 |
| Cow position: | chr3:62737581-62737351 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr3:69037236-69037006 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr3:71012549-71012320 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 19, 98 |
| Conread position: | 165-396 |
| Cow position: | chr3:76509539-76509769 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-398 |
| Cow position: | chr3:3250634-3250401 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-398 |
| Cow position: | chr3:22885273-22885503 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 16 |
| Conread position: | 165-398 |
| Cow position: | chr3:56969061-56969286 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-399 |
| Cow position: | chr3:24812523-24812291 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 16 |
| Conread position: | 165-401 |
| Cow position: | chr3:11243956-11243721 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 93 |
| Conread position: | 165-401 |
| Cow position: | chr3:14728797-14729030 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-405 |
| Cow position: | chr3:15057169-15056930 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 94 |
| Conread position: | 165-405 |
| Cow position: | chr3:32682528-32682764 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 165-408 |
| Cow position: | chr3:60091259-60091016 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 91 |
| Conread position: | 165-422 |
| Cow position: | chr3:51094439-51094691 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 155, 67 |
| Conread position: | 165-430 |
| Cow position: | chr3:7530718-7530451 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 91 |
| Conread position: | 165-637 |
| Cow position: | chr3:52711128-52711589 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 96 |
| Conread position: | 165-652 |
| Cow position: | chr3:35249030-35249516 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 59 |
| Conread position: | 165-655 |
| Cow position: | chr3:26607251-26607744 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 97 |
| Conread position: | 165-667 |
| Cow position: | chr3:5452502-5452012 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 90 |
| Conread position: | 166-396 |
| Cow position: | chr3:7829544-7829326 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 39, 17 |
| Conread position: | 166-396 |
| Cow position: | chr3:75163897-75163675 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 179 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 154, 92 |
| Conread position: | 166-396 |
| Cow position: | chr3:80440797-80441026 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 92 |
| Conread position: | 166-410 |
| Cow position: | chr3:19474864-19474621 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 32 |
| Conread position: | 167-396 |
| Cow position: | chr3:64111674-64111449 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 91 |
| Conread position: | 167-651 |
| Cow position: | chr3:34562625-34562140 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 95 |
| Conread position: | 168-422 |
| Cow position: | chr3:78788757-78789012 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 94 |
| Conread position: | 171-447 |
| Cow position: | chr3:61963826-61963562 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 20, 88 |
| Conread position: | 172-389 |
| Cow position: | chr3:23831006-23830796 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 86 |
| Conread position: | 172-657 |
| Cow position: | chr3:13613396-13613867 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 28 |
| Conread position: | 174-396 |
| Cow position: | chr3:38529543-38529764 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 84 |
| Conread position: | 175-296 |
| Cow position: | chr3:20353283-20353165 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 177-494 |
| Cow position: | chr3:8008930-8008616 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 52 |
| Conread position: | 177-641 |
| Cow position: | chr3:81350283-81349831 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 84 |
| Conread position: | 180-485 |
| Cow position: | chr3:60064448-60064743 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 73 |
| Conread position: | 186-396 |
| Cow position: | chr3:38280424-38280633 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 72 |
| Conread position: | 188-661 |
| Cow position: | chr3:2445802-2446268 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 73 |
| Conread position: | 203-447 |
| Cow position: | chr3:81827504-81827749 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 58 |
| Conread position: | 203-656 |
| Cow position: | chr3:83331267-83331721 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 310 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 115, 58 |
| Conread position: | 246-394 |
| Cow position: | chr3:74477172-74477025 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 72, 15 |
| Conread position: | 267-396 |
| Cow position: | chr3:2481891-2482021 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 268-655 |
| Cow position: | chr3:49874158-49873781 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 272 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 50, 26 |
Show alignments to all cow chromosomes.