Cow genome map
| Conread name: | Thy1-THY010074B02 |
| Conread position: | 152-398 |
| Cow position: | chr4:65584083-65583838 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 107 |
| Conread position: | 153-398 |
| Cow position: | chr4:20827114-20826876 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 189 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 9, 43 |
| Conread position: | 157-396 |
| Cow position: | chr4:35239072-35238834 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 101 |
| Conread position: | 163-396 |
| Cow position: | chr4:14529282-14529050 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 95 |
| Conread position: | 163-396 |
| Cow position: | chr4:16738150-16738382 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 93 |
| Conread position: | 163-396 |
| Cow position: | chr4:41846377-41846590 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 174, 20 |
| Conread position: | 163-505 |
| Cow position: | chr4:32711492-32711840 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 33 |
| Conread position: | 163-641 |
| Cow position: | chr4:10382678-10383146 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 95 |
| Conread position: | 163-655 |
| Cow position: | chr4:8195251-8195740 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 341 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 44, 78 |
| Conread position: | 164-260 |
| Cow position: | chr4:12219398-12219302 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 164-343 |
| Cow position: | chr4:32189414-32189236 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 150 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-395 |
| Cow position: | chr4:69177605-69177372 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 164-396 |
| Cow position: | chr4:5233743-5233973 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-396 |
| Cow position: | chr4:10906884-10907114 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-396 |
| Cow position: | chr4:12564151-12563921 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-396 |
| Cow position: | chr4:18953594-18953825 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-396 |
| Cow position: | chr4:34268230-34267999 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 98 |
| Conread position: | 164-396 |
| Cow position: | chr4:43402515-43402284 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-396 |
| Cow position: | chr4:45059034-45059267 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 81 |
| Conread position: | 164-396 |
| Cow position: | chr4:48842554-48842323 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 165-293 |
| Cow position: | chr4:5495066-5495191 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 165-338 |
| Cow position: | chr4:13487806-13487634 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-341 |
| Cow position: | chr4:7173808-7173982 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 76, 25 |
| Conread position: | 165-393 |
| Cow position: | chr4:36162344-36162117 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 97 |
| Conread position: | 165-394 |
| Cow position: | chr4:35044600-35044372 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-395 |
| Cow position: | chr4:4717547-4717321 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 153, 18 |
| Conread position: | 165-395 |
| Cow position: | chr4:6262265-6262495 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 128, 18 |
| Conread position: | 165-396 |
| Cow position: | chr4:9263092-9262863 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr4:11259438-11259669 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 94 |
| Conread position: | 165-396 |
| Cow position: | chr4:12228963-12228742 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 93 |
| Conread position: | 165-396 |
| Cow position: | chr4:14526314-14526544 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr4:16938265-16938489 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr4:17142047-17142277 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr4:30044687-30044914 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 84 |
| Conread position: | 165-396 |
| Cow position: | chr4:32835537-32835767 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr4:48555252-48555478 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 73 |
| Conread position: | 165-396 |
| Cow position: | chr4:52121112-52120883 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 22, 94 |
| Conread position: | 165-396 |
| Cow position: | chr4:54860456-54860686 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 96 |
| Conread position: | 165-396 |
| Cow position: | chr4:55322864-55322634 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 93 |
| Conread position: | 165-398 |
| Cow position: | chr4:31956707-31956476 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-398 |
| Cow position: | chr4:60736420-60736192 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-399 |
| Cow position: | chr4:46952551-46952318 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-637 |
| Cow position: | chr4:22906854-22907314 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 166-318 |
| Cow position: | chr4:67531156-67531306 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 167-396 |
| Cow position: | chr4:30414751-30414984 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 38, 87 |
| Conread position: | 167-655 |
| Cow position: | chr4:27763553-27763065 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 92 |
| Conread position: | 168-505 |
| Cow position: | chr4:46297480-46297158 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 90 |
| Conread position: | 171-514 |
| Cow position: | chr4:60136253-60136592 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 87 |
| Conread position: | 172-396 |
| Cow position: | chr4:35552060-35552282 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 86 |
| Conread position: | 174-396 |
| Cow position: | chr4:11737536-11737320 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 87 |
| Conread position: | 203-396 |
| Cow position: | chr4:5227040-5227233 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 154 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 117, 55 |
| Conread position: | 259-421 |
| Cow position: | chr4:45560673-45560508 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 302-398 |
| Cow position: | chr4:36161575-36161478 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 82 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
Show alignments to all cow chromosomes.