Cow genome map
| Conread name: | Thy1-THY010074B02 |
| Conread position: | 159-396 |
| Cow position: | chr5:61893689-61893930 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 100 |
| Conread position: | 161-396 |
| Cow position: | chr5:2189980-2189755 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 59 |
| Conread position: | 162-396 |
| Cow position: | chr5:37023826-37024052 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 156, 96 |
| Conread position: | 163-363 |
| Cow position: | chr5:35979204-35979005 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 99 |
| Conread position: | 163-396 |
| Cow position: | chr5:54668352-54668595 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 144, 95 |
| Conread position: | 164-318 |
| Cow position: | chr5:47994082-47993930 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 164-324 |
| Cow position: | chr5:13540444-13540603 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 139 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-330 |
| Cow position: | chr5:27382803-27382967 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 40, 86 |
| Conread position: | 164-394 |
| Cow position: | chr5:3030112-3029883 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 41, 96 |
| Conread position: | 164-395 |
| Cow position: | chr5:53177613-53177843 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-396 |
| Cow position: | chr5:8769188-8769419 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-396 |
| Cow position: | chr5:44903527-44903297 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 55 |
| Conread position: | 164-405 |
| Cow position: | chr5:21509332-21509569 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 59 |
| Conread position: | 164-422 |
| Cow position: | chr5:22847759-22848019 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 199 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 33, 43 |
| Conread position: | 165-343 |
| Cow position: | chr5:50869295-50869119 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 148 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 151, 58 |
| Conread position: | 165-396 |
| Cow position: | chr5:8762615-8762848 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr5:9967790-9967561 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr5:15705372-15705602 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr5:19563273-19563505 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 9, 94 |
| Conread position: | 165-396 |
| Cow position: | chr5:26827683-26827912 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 23 |
| Conread position: | 165-396 |
| Cow position: | chr5:27385278-27385050 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 77 |
| Conread position: | 165-396 |
| Cow position: | chr5:35332480-35332253 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 165-396 |
| Cow position: | chr5:47865436-47865209 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 165-396 |
| Cow position: | chr5:49869316-49869087 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 76 |
| Conread position: | 165-396 |
| Cow position: | chr5:53941648-53941878 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 93 |
| Conread position: | 165-396 |
| Cow position: | chr5:63141946-63141720 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 165-396 |
| Cow position: | chr5:70712786-70713017 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 84 |
| Conread position: | 165-396 |
| Cow position: | chr5:74169394-74169624 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 33, 18 |
| Conread position: | 165-398 |
| Cow position: | chr5:27889225-27889457 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-399 |
| Cow position: | chr5:18779645-18779415 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 26, 98 |
| Conread position: | 165-408 |
| Cow position: | chr5:64799427-64799668 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-641 |
| Cow position: | chr5:50824110-50823634 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-641 |
| Cow position: | chr5:71133995-71133528 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 48 |
| Conread position: | 165-651 |
| Cow position: | chr5:35483071-35482565 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 97 |
| Conread position: | 165-655 |
| Cow position: | chr5:68411449-68410996 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 348 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 153, 84 |
| Conread position: | 166-337 |
| Cow position: | chr5:31096093-31096264 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 152, 90 |
| Conread position: | 166-396 |
| Cow position: | chr5:33334141-33334370 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 95 |
| Conread position: | 167-395 |
| Cow position: | chr5:66391187-66390960 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 91 |
| Conread position: | 167-396 |
| Cow position: | chr5:667037-667262 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 74 |
| Conread position: | 167-396 |
| Cow position: | chr5:3039339-3039111 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 91 |
| Conread position: | 167-396 |
| Cow position: | chr5:60097165-60096931 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 91 |
| Conread position: | 167-396 |
| Cow position: | chr5:60151307-60151080 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 94 |
| Conread position: | 167-401 |
| Cow position: | chr5:47998104-47997882 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 152, 91 |
| Conread position: | 171-396 |
| Cow position: | chr5:5943876-5944091 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 149, 81 |
| Conread position: | 171-398 |
| Cow position: | chr5:30234390-30234166 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 149, 90 |
| Conread position: | 174-651 |
| Cow position: | chr5:14896801-14897269 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 117 |
| Conread position: | 183-396 |
| Cow position: | chr5:59558395-59558184 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 165 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 21, 66 |
| Conread position: | 184-394 |
| Cow position: | chr5:9539805-9540016 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 22, 81 |
| Conread position: | 188-401 |
| Cow position: | chr5:17873033-17873231 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 132, 48 |
| Conread position: | 191-506 |
| Cow position: | chr5:13565556-13565874 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 18 |
| Conread position: | 203-396 |
| Cow position: | chr5:67945651-67945842 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 117, 5 |
| Conread position: | 214-657 |
| Cow position: | chr5:18892738-18893172 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 314 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 104, 47 |
| Conread position: | 256-384 |
| Cow position: | chr5:60936017-60936146 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 259-396 |
| Cow position: | chr5:21663873-21663735 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 8, 98 |
Show alignments to all cow chromosomes.