Cow genome map
| Conread name: | Thy1-THY010074B02 |
| Conread position: | 152-651 |
| Cow position: | chr6:32521834-32522335 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 108 |
| Conread position: | 161-314 |
| Cow position: | chr6:4816951-4817100 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 161-389 |
| Cow position: | chr6:5075013-5074786 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 36 |
| Conread position: | 162-505 |
| Cow position: | chr6:4149973-4149628 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 94 |
| Conread position: | 163-257 |
| Cow position: | chr6:38653549-38653643 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 80 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 163-396 |
| Cow position: | chr6:7870697-7870929 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 95 |
| Conread position: | 163-396 |
| Cow position: | chr6:22875346-22875575 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 95 |
| Conread position: | 163-396 |
| Cow position: | chr6:44691757-44691525 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 95 |
| Conread position: | 163-396 |
| Cow position: | chr6:50350281-50350514 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 91 |
| Conread position: | 163-422 |
| Cow position: | chr6:67428924-67428668 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 18 |
| Conread position: | 164-396 |
| Cow position: | chr6:19261212-19261447 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 17 |
| Conread position: | 164-396 |
| Cow position: | chr6:20532913-20532693 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 156, 94 |
| Conread position: | 164-396 |
| Cow position: | chr6:23898163-23898394 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-396 |
| Cow position: | chr6:23904339-23904570 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-396 |
| Cow position: | chr6:48724608-48724377 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-396 |
| Cow position: | chr6:60865844-60866075 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-494 |
| Cow position: | chr6:22816833-22817146 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 19 |
| Conread position: | 164-637 |
| Cow position: | chr6:2597803-2597345 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 164-644 |
| Cow position: | chr6:57793702-57794172 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 97 |
| Conread position: | 164-648 |
| Cow position: | chr6:26939886-26939412 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 88 |
| Conread position: | 165-394 |
| Cow position: | chr6:54538596-54538823 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 153, 96 |
| Conread position: | 165-396 |
| Cow position: | chr6:104187-104417 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr6:2981599-2981824 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 29 |
| Conread position: | 165-396 |
| Cow position: | chr6:2982582-2982351 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 97 |
| Conread position: | 165-396 |
| Cow position: | chr6:7527858-7528095 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 9, 85 |
| Conread position: | 165-396 |
| Cow position: | chr6:36675191-36674961 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr6:36923103-36923333 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr6:36924374-36924144 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr6:44459917-44460146 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr6:48025326-48025556 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr6:49756894-49756665 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr6:52418918-52418688 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 165-396 |
| Cow position: | chr6:52961887-52962111 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 25 |
| Conread position: | 165-396 |
| Cow position: | chr6:65680292-65680063 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 96 |
| Conread position: | 165-398 |
| Cow position: | chr6:42768526-42768746 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 153, 94 |
| Conread position: | 165-398 |
| Cow position: | chr6:61409111-61409343 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 97 |
| Conread position: | 165-401 |
| Cow position: | chr6:23212983-23212750 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 72 |
| Conread position: | 165-405 |
| Cow position: | chr6:59689445-59689206 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 91 |
| Conread position: | 165-408 |
| Cow position: | chr6:19041870-19042114 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 98 |
| Conread position: | 165-571 |
| Cow position: | chr6:15034859-15035261 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 165-637 |
| Cow position: | chr6:66256286-66255816 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 67 |
| Conread position: | 165-641 |
| Cow position: | chr6:3661416-3660950 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 93 |
| Conread position: | 165-655 |
| Cow position: | chr6:39448763-39449245 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 336 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 155, 58 |
| Conread position: | 167-363 |
| Cow position: | chr6:15236356-15236540 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 151, 65 |
| Conread position: | 167-398 |
| Cow position: | chr6:53430603-53430832 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 94 |
| Conread position: | 167-664 |
| Cow position: | chr6:61434722-61435219 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 55 |
| Conread position: | 171-655 |
| Cow position: | chr6:26246054-26245551 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 40 |
| Conread position: | 193-396 |
| Cow position: | chr6:46533364-46533163 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 68 |
| Conread position: | 197-422 |
| Cow position: | chr6:55522521-55522295 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 121, 65 |
| Conread position: | 202-398 |
| Cow position: | chr6:2159312-2159117 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 155 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 116, 59 |
| Conread position: | 223-396 |
| Cow position: | chr6:16554862-16554690 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 97, 38 |
| Conread position: | 237-650 |
| Cow position: | chr6:49411757-49412172 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 288 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 68, 24 |
| Conread position: | 252-641 |
| Cow position: | chr6:55844079-55843701 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 75, 162 |
| Conread position: | 369-500 |
| Cow position: | chr6:69359865-69360001 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 42, 67 |
Show alignments to all cow chromosomes.