• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Thy1-THY010079D05
        

               
Conread position:
               
89-718
               

               
Cow position:
               
chr24:28063160-28062507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 216
               

               
Conread position:
               
95-571
               

               
Cow position:
               
chr24:29389418-29388957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 14
               

               
Conread position:
               
96-461
               

               
Cow position:
               
chr24:37945446-37945816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
8, 31
               

               
Conread position:
               
97-710
               

               
Cow position:
               
chr24:35675730-35675127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 134
               

               
Conread position:
               
104-579
               

               
Cow position:
               
chr24:28599681-28600155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
21, 36
               

               
Conread position:
               
110-335
               

               
Cow position:
               
chr24:33244571-33244341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
39, 18
               

               
Conread position:
               
110-647
               

               
Cow position:
               
chr24:37650861-37650310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 384
               

               
Conread position:
               
110-714
               

               
Cow position:
               
chr24:33372732-33372123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 166
               

               
Conread position:
               
113-395
               

               
Cow position:
               
chr24:37974800-37975097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 274
               

               
Conread position:
               
113-495
               

               
Cow position:
               
chr24:20801162-20801556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
34, 233
               

               
Conread position:
               
113-538
               

               
Cow position:
               
chr24:41980477-41980921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
33, 174
               

               
Conread position:
               
113-704
               

               
Cow position:
               
chr24:212153-211555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 112
               

               
Conread position:
               
114-325
               

               
Cow position:
               
chr24:29984808-29985029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
32, 70
               

               
Conread position:
               
114-377
               

               
Cow position:
               
chr24:28045915-28045653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
33, 77
               

               
Conread position:
               
114-475
               

               
Cow position:
               
chr24:30897380-30897734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 71
               

               
Conread position:
               
114-568
               

               
Cow position:
               
chr24:23694729-23695185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 92
               

               
Conread position:
               
114-694
               

               
Cow position:
               
chr24:32054828-32054254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 38
               

               
Conread position:
               
115-548
               

               
Cow position:
               
chr24:16995059-16994628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
32, 188
               

               
Conread position:
               
115-566
               

               
Cow position:
               
chr24:28700224-28699769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
64, 31
               

               
Conread position:
               
115-646
               

               
Cow position:
               
chr24:39483644-39483108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 105
               

               
Conread position:
               
116-373
               

               
Cow position:
               
chr24:50271-50519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
31, 75
               

               
Conread position:
               
118-325
               

               
Cow position:
               
chr24:22133344-22133126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
23, 58
               

               
Conread position:
               
118-701
               

               
Cow position:
               
chr24:30236050-30235455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 165
               

               
Conread position:
               
118-718
               

               
Cow position:
               
chr24:18731931-18732553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 8
               

               
Conread position:
               
118-753
               

               
Cow position:
               
chr24:28722056-28721408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 155
               

               
Conread position:
               
119-311
               

               
Cow position:
               
chr24:24227514-24227711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
27, 107
               

               
Conread position:
               
119-395
               

               
Cow position:
               
chr24:20807700-20807417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
28, 9
               

               
Conread position:
               
119-718
               

               
Cow position:
               
chr24:11840361-11839740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 233
               

               
Conread position:
               
120-319
               

               
Cow position:
               
chr24:42226440-42226234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
60, 30
               

               
Conread position:
               
120-337
               

               
Cow position:
               
chr24:21834787-21835019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
120-382
               

               
Cow position:
               
chr24:37823700-37823427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
26, 236
               

               
Conread position:
               
120-383
               

               
Cow position:
               
chr24:230456-230172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
120-421
               

               
Cow position:
               
chr24:28234217-28233907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
27, 161
               

               
Conread position:
               
120-446
               

               
Cow position:
               
chr24:19000219-18999880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
26, 235
               

               
Conread position:
               
120-456
               

               
Cow position:
               
chr24:18356881-18357230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 20
               

               
Conread position:
               
120-511
               

               
Cow position:
               
chr24:34396014-34396402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
26, 39
               

               
Conread position:
               
120-526
               

               
Cow position:
               
chr24:24755605-24755205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 30
               

               
Conread position:
               
120-530
               

               
Cow position:
               
chr24:18474553-18474996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
120-548
               

               
Cow position:
               
chr24:36403980-36404413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 61
               

               
Conread position:
               
120-610
               

               
Cow position:
               
chr24:40301336-40300824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 157
               

               
Conread position:
               
120-647
               

               
Cow position:
               
chr24:42103537-42103001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 35
               

               
Conread position:
               
120-702
               

               
Cow position:
               
chr24:3494057-3493472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 234
               

               
Conread position:
               
120-707
               

               
Cow position:
               
chr24:2402201-2402805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 66
               

               
Conread position:
               
120-711
               

               
Cow position:
               
chr24:18484815-18485432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 149
               

               
Conread position:
               
120-719
               

               
Cow position:
               
chr24:27906614-27905987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 53
               

               
Conread position:
               
121-319
               

               
Cow position:
               
chr24:28510966-28510758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 63
               

               
Conread position:
               
121-327
               

               
Cow position:
               
chr24:39238936-39238724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
26, 83
               

               
Conread position:
               
121-369
               

               
Cow position:
               
chr24:175333-175586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
26, 45
               

               
Conread position:
               
121-405
               

               
Cow position:
               
chr24:39523275-39523573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
25, 215
               

               
Conread position:
               
121-463
               

               
Cow position:
               
chr24:41423770-41423425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
25, 11
               

               
Conread position:
               
121-609
               

               
Cow position:
               
chr24:17311054-17311540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 29
               

               
Conread position:
               
121-639
               

               
Cow position:
               
chr24:24490851-24491371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 13
               

               
Conread position:
               
121-675
               

               
Cow position:
               
chr24:41986149-41985569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 24
               

               
Conread position:
               
121-712
               

               
Cow position:
               
chr24:27844358-27844954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 257
               

               
Conread position:
               
121-714
               

               
Cow position:
               
chr24:15246484-15247061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
121-718
               

               
Cow position:
               
chr24:5142113-5141492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 29
               

               
Conread position:
               
121-718
               

               
Cow position:
               
chr24:31812360-31811747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 266
               

               
Conread position:
               
121-726
               

               
Cow position:
               
chr24:28303187-28303799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 272
               

               
Conread position:
               
122-362
               

               
Cow position:
               
chr24:18442398-18442643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
25, 69
               

               
Conread position:
               
122-568
               

               
Cow position:
               
chr24:27607937-27608384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 69
               

               
Conread position:
               
122-714
               

               
Cow position:
               
chr24:11887327-11886728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 34
               

               
Conread position:
               
123-310
               

               
Cow position:
               
chr24:13610474-13610281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 111
               

               
Conread position:
               
126-333
               

               
Cow position:
               
chr24:6723923-6723714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
21, 65
               

               
Conread position:
               
126-411
               

               
Cow position:
               
chr24:27713240-27713536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 270
               

               
Conread position:
               
126-455
               

               
Cow position:
               
chr24:37038061-37037723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 58
               

               
Conread position:
               
126-535
               

               
Cow position:
               
chr24:27748790-27748396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 58
               

               
Conread position:
               
126-545
               

               
Cow position:
               
chr24:1269947-1269541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 155
               

               
Conread position:
               
126-545
               

               
Cow position:
               
chr24:39227143-39226735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 91
               

               
Conread position:
               
126-548
               

               
Cow position:
               
chr24:30313859-30314302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 245
               

               
Conread position:
               
126-548
               

               
Cow position:
               
chr24:30544720-30545122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
21, 65
               

               
Conread position:
               
126-568
               

               
Cow position:
               
chr24:17860092-17860541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 275
               

               
Conread position:
               
126-667
               

               
Cow position:
               
chr24:17955295-17955824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 91
               

               
Conread position:
               
126-718
               

               
Cow position:
               
chr24:17104402-17105003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
126-718
               

               
Cow position:
               
chr24:18374934-18374353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 223
               

               
Conread position:
               
127-327
               

               
Cow position:
               
chr24:5360880-5360671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
20, 148
               

               
Conread position:
               
127-694
               

               
Cow position:
               
chr24:32124485-32125039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
7, 30
               

               
Conread position:
               
127-712
               

               
Cow position:
               
chr24:43635583-43634998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 143
               

               
Conread position:
               
129-372
               

               
Cow position:
               
chr24:25122504-25122261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
18, 146
               

               
Conread position:
               
129-484
               

               
Cow position:
               
chr24:6131720-6132078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 21
               

               
Conread position:
               
129-613
               

               
Cow position:
               
chr24:43028161-43028667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 172
               

               
Conread position:
               
132-406
               

               
Cow position:
               
chr24:29561415-29561701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
23, 218
               

               
Conread position:
               
133-530
               

               
Cow position:
               
chr24:27824599-27824216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 13
               

               
Conread position:
               
133-652
               

               
Cow position:
               
chr24:23556174-23556702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 158
               

               
Conread position:
               
135-568
               

               
Cow position:
               
chr24:31816736-31816295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 253
               

               
Conread position:
               
136-557
               

               
Cow position:
               
chr24:41756010-41755587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
11, 151
               

               
Conread position:
               
137-672
               

               
Cow position:
               
chr24:44040852-44041400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 344
               

               
Conread position:
               
150-698
               

               
Cow position:
               
chr24:28496461-28497008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 21
               

               
Conread position:
               
151-548
               

               
Cow position:
               
chr24:19769615-19769232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 14
               

               
Conread position:
               
153-446
               

               
Cow position:
               
chr24:35576420-35576702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
18, 12
               

               
Conread position:
               
153-459
               

               
Cow position:
               
chr24:29587116-29586813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
141, 12
               

               
Conread position:
               
153-500
               

               
Cow position:
               
chr24:6102947-6102605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
19, 12
               

               
Conread position:
               
153-613
               

               
Cow position:
               
chr24:28319088-28319541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 34
               

               
Conread position:
               
153-718
               

               
Cow position:
               
chr24:33944521-33943960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 19
               

               
Conread position:
               
153-718
               

               
Cow position:
               
chr24:44987257-44987813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 12
               

               
Conread position:
               
156-392
               

               
Cow position:
               
chr24:14457608-14457835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
19, 61
               

               
Conread position:
               
158-501
               

               
Cow position:
               
chr24:31359454-31359104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 174
               

               
Conread position:
               
160-613
               

               
Cow position:
               
chr24:5754962-5754506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 218
               

               
Conread position:
               
163-712
               

               
Cow position:
               
chr24:6150137-6149599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 26
               

               
Conread position:
               
175-422
               

               
Cow position:
               
chr24:24662034-24662272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
141, 42
               

               
Conread position:
               
176-368
               

               
Cow position:
               
chr24:27284912-27284732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
161, 40
               

               
Conread position:
               
176-714
               

               
Cow position:
               
chr24:29063552-29064079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
178-516
               

               
Cow position:
               
chr24:33221839-33222174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 11
               

               
Conread position:
               
178-634
               

               
Cow position:
               
chr24:18970414-18970844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 39
               

               
Conread position:
               
178-646
               

               
Cow position:
               
chr24:33153870-33153420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 39
               

               
Conread position:
               
179-541
               

               
Cow position:
               
chr24:30229570-30229209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 22
               

               
Conread position:
               
179-718
               

               
Cow position:
               
chr24:27290964-27290436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 37
               

               
Conread position:
               
180-393
               

               
Cow position:
               
chr24:41405986-41405783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
105, 36
               

               
Conread position:
               
180-436
               

               
Cow position:
               
chr24:28289162-28289405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
193, 15
               

               
Conread position:
               
180-461
               

               
Cow position:
               
chr24:17832729-17832996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
193, 36
               

               
Conread position:
               
180-480
               

               
Cow position:
               
chr24:16089319-16089035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
146, 24
               

               
Conread position:
               
180-488
               

               
Cow position:
               
chr24:32071053-32070757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
193, 36
               

               
Conread position:
               
180-494
               

               
Cow position:
               
chr24:28253811-28253495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
42, 36
               

               
Conread position:
               
180-495
               

               
Cow position:
               
chr24:34008481-34008793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
162, 37
               

               
Conread position:
               
180-500
               

               
Cow position:
               
chr24:16510069-16509755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
115, 34
               

               
Conread position:
               
180-503
               

               
Cow position:
               
chr24:33465530-33465821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
193, 19
               

               
Conread position:
               
180-538
               

               
Cow position:
               
chr24:34742845-34742493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
116, 36
               

               
Conread position:
               
180-548
               

               
Cow position:
               
chr24:17294106-17294453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
153, 36
               

               
Conread position:
               
180-548
               

               
Cow position:
               
chr24:18331812-18331470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
42, 36
               

               
Conread position:
               
180-548
               

               
Cow position:
               
chr24:25885067-25885424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 37
               

               
Conread position:
               
180-585
               

               
Cow position:
               
chr24:31159707-31159319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
153, 37
               

               
Conread position:
               
180-592
               

               
Cow position:
               
chr24:15861502-15861911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 33
               

               
Conread position:
               
180-714
               

               
Cow position:
               
chr24:11119369-11118851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 36
               

               
Conread position:
               
180-718
               

               
Cow position:
               
chr24:18741480-18742010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 36
               

               
Conread position:
               
180-744
               

               
Cow position:
               
chr24:33098381-33098961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 36
               

               
Conread position:
               
181-719
               

               
Cow position:
               
chr24:32204704-32205244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 35
               

               
Conread position:
               
182-498
               

               
Cow position:
               
chr24:15373495-15373194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 35
               

               
Conread position:
               
182-744
               

               
Cow position:
               
chr24:40130219-40129646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 34
               

               
Conread position:
               
183-369
               

               
Cow position:
               
chr24:17375727-17375560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
183-369
               

               
Cow position:
               
chr24:28043064-28042883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
139, 33
               

               
Conread position:
               
183-708
               

               
Cow position:
               
chr24:24250811-24250294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 33
               

               
Conread position:
               
183-744
               

               
Cow position:
               
chr24:814181-814728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 12
               

               
Conread position:
               
184-500
               

               
Cow position:
               
chr24:24457163-24457464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 15
               

               
Conread position:
               
184-712
               

               
Cow position:
               
chr24:32369827-32370351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 32
               

               
Conread position:
               
185-511
               

               
Cow position:
               
chr24:28326994-28327312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
136, 32
               

               
Conread position:
               
185-676
               

               
Cow position:
               
chr24:43364445-43363965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 32
               

               
Conread position:
               
186-638
               

               
Cow position:
               
chr24:29679227-29679671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 30
               

               
Conread position:
               
188-374
               

               
Cow position:
               
chr24:27349081-27349274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 86
               

               
Conread position:
               
188-548
               

               
Cow position:
               
chr24:43200180-43200540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
38, 90
               

               
Conread position:
               
188-676
               

               
Cow position:
               
chr24:2675405-2674934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
189-530
               

               
Cow position:
               
chr24:2095799-2096137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
104, 20
               

               
Conread position:
               
191-712
               

               
Cow position:
               
chr24:29673613-29673086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 278
               

               
Conread position:
               
192-474
               

               
Cow position:
               
chr24:14171602-14171889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
193-490
               

               
Cow position:
               
chr24:28990650-28990358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 147
               

               
Conread position:
               
211-717
               

               
Cow position:
               
chr24:31324355-31323849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 260
               

               
Conread position:
               
221-481
               

               
Cow position:
               
chr24:22647281-22647544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
5, 36
               

               
Conread position:
               
221-619
               

               
Cow position:
               
chr24:34272871-34272461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
5, 122
               

               
Conread position:
               
223-451
               

               
Cow position:
               
chr24:19736277-19736500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
124, 93
               

               
Conread position:
               
223-459
               

               
Cow position:
               
chr24:19261321-19261540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
223-461
               

               
Cow position:
               
chr24:16895380-16895618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
99, 108
               

               
Conread position:
               
223-712
               

               
Cow position:
               
chr24:29595752-29596240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 314
               

               
Conread position:
               
224-426
               

               
Cow position:
               
chr24:32739214-32739419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
91, 73
               

               
Conread position:
               
224-443
               

               
Cow position:
               
chr24:6450549-6450332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
50, 11
               

               
Conread position:
               
224-568
               

               
Cow position:
               
chr24:8886966-8886626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
71, 123
               

               
Conread position:
               
224-596
               

               
Cow position:
               
chr24:29782217-29781844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 11
               

               
Conread position:
               
224-613
               

               
Cow position:
               
chr24:3430789-3430387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 57
               

               
Conread position:
               
224-694
               

               
Cow position:
               
chr24:28690740-28690282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 42
               

               
Conread position:
               
224-718
               

               
Cow position:
               
chr24:43432846-43432339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 69
               

               
Conread position:
               
225-522
               

               
Cow position:
               
chr24:18344119-18343808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
11, 251
               

               
Conread position:
               
226-362
               

               
Cow position:
               
chr24:44145632-44145497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
103, 38
               

               
Conread position:
               
226-412
               

               
Cow position:
               
chr24:29605979-29606176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
226-416
               

               
Cow position:
               
chr24:23863575-23863771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
226-453
               

               
Cow position:
               
chr24:23186865-23187091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
118, 171
               

               
Conread position:
               
226-529
               

               
Cow position:
               
chr24:6912310-6912599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
111, 146
               

               
Conread position:
               
226-549
               

               
Cow position:
               
chr24:27725958-27726271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 212
               

               
Conread position:
               
226-647
               

               
Cow position:
               
chr24:20874735-20874311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 20
               

               
Conread position:
               
226-712
               

               
Cow position:
               
chr24:19465863-19466367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 313
               

               
Conread position:
               
227-474
               

               
Cow position:
               
chr24:352554-352800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
146, 26
               

               
Conread position:
               
227-548
               

               
Cow position:
               
chr24:19141-19487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
76, 156
               

               
Conread position:
               
227-712
               

               
Cow position:
               
chr24:201584-202067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 148
               

               
Conread position:
               
230-382
               

               
Cow position:
               
chr24:30308503-30308660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
230-400
               

               
Cow position:
               
chr24:39791591-39791418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
230-426
               

               
Cow position:
               
chr24:36008536-36008338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
90, 115
               

               
Conread position:
               
230-443
               

               
Cow position:
               
chr24:18017277-18017063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
142, 115
               

               
Conread position:
               
230-445
               

               
Cow position:
               
chr24:26554547-26554767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
90, 134
               

               
Conread position:
               
230-475
               

               
Cow position:
               
chr24:17434660-17434415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
143, 32
               

               
Conread position:
               
230-513
               

               
Cow position:
               
chr24:20249846-20250135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
230-543
               

               
Cow position:
               
chr24:27096739-27096425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
90, 43
               

               
Conread position:
               
230-582
               

               
Cow position:
               
chr24:42344947-42345312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
230-712
               

               
Cow position:
               
chr24:38815017-38814540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 155
               

               
Conread position:
               
230-718
               

               
Cow position:
               
chr24:23616746-23616255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 110
               

               
Conread position:
               
231-490
               

               
Cow position:
               
chr24:15707396-15707650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
142, 35
               

               
Conread position:
               
231-498
               

               
Cow position:
               
chr24:5632982-5633252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
231-511
               

               
Cow position:
               
chr24:18771131-18771416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
51, 123
               

               
Conread position:
               
231-590
               

               
Cow position:
               
chr24:35332774-35332407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
61, 138
               

               
Conread position:
               
231-596
               

               
Cow position:
               
chr24:27340970-27341342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 75
               

               
Conread position:
               
231-718
               

               
Cow position:
               
chr24:17407438-17406956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 161
               

               
Conread position:
               
231-718
               

               
Cow position:
               
chr24:33621432-33621926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 175
               

               
Conread position:
               
232-602
               

               
Cow position:
               
chr24:26928896-26929273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 110
               

               
Conread position:
               
235-595
               

               
Cow position:
               
chr24:20741368-20741005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
96, 177
               

               
Conread position:
               
235-718
               

               
Cow position:
               
chr24:3152533-3153025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 10
               

               
Conread position:
               
237-451
               

               
Cow position:
               
chr24:24061765-24061974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
100, 18
               

               
Conread position:
               
238-400
               

               
Cow position:
               
chr24:37267704-37267540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
91, 101
               

               
Conread position:
               
238-510
               

               
Cow position:
               
chr24:39143654-39143378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
82, 256
               

               
Conread position:
               
238-718
               

               
Cow position:
               
chr24:32693761-32693265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 195
               

               
Conread position:
               
240-549
               

               
Cow position:
               
chr24:7914046-7913731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
243-433
               

               
Cow position:
               
chr24:43967462-43967655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
243-718
               

               
Cow position:
               
chr24:20024650-20024172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 64
               

               
Conread position:
               
246-508
               

               
Cow position:
               
chr24:10012786-10012546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
172, 76
               

               
Conread position:
               
246-530
               

               
Cow position:
               
chr24:6487950-6487672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 20
               

               
Conread position:
               
247-501
               

               
Cow position:
               
chr24:39833482-39833734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 80
               

               
Conread position:
               
252-446
               

               
Cow position:
               
chr24:17492326-17492148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
255-508
               

               
Cow position:
               
chr24:10841182-10841442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
85, 203
               

               
Conread position:
               
267-712
               

               
Cow position:
               
chr24:27052481-27052925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 71
               

               
Conread position:
               
275-639
               

               
Cow position:
               
chr24:634982-634629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 55
               

               
Conread position:
               
281-437
               

               
Cow position:
               
chr24:4615521-4615677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
62, 49
               

               
Conread position:
               
281-548
               

               
Cow position:
               
chr24:35794736-35795006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 96
               

               
Conread position:
               
284-593
               

               
Cow position:
               
chr24:42007736-42007431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
89, 161
               

               
Conread position:
               
284-718
               

               
Cow position:
               
chr24:17363652-17364091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 90
               

               
Conread position:
               
285-460
               

               
Cow position:
               
chr24:27202595-27202416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
285-608
               

               
Cow position:
               
chr24:34315351-34315029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
43, 183
               

               
Conread position:
               
290-548
               

               
Cow position:
               
chr24:17567375-17567124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
82, 53
               

               
Conread position:
               
290-647
               

               
Cow position:
               
chr24:29028031-29027684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 48
               

               
Conread position:
               
291-519
               

               
Cow position:
               
chr24:18695608-18695384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
82, 49
               

               
Conread position:
               
291-718
               

               
Cow position:
               
chr24:24136872-24137292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
54, 32
               

               
Conread position:
               
291-718
               

               
Cow position:
               
chr24:27719771-27720187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 16
               

               
Conread position:
               
292-661
               

               
Cow position:
               
chr24:27267615-27267255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 30
               

               
Conread position:
               
298-542
               

               
Cow position:
               
chr24:40184606-40184364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
30, 46
               

               
Conread position:
               
298-544
               

               
Cow position:
               
chr24:40407962-40408208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
75, 163
               

               
Conread position:
               
299-549
               

               
Cow position:
               
chr24:21860241-21860487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
29, 148
               

               
Conread position:
               
301-557
               

               
Cow position:
               
chr24:40850141-40849885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
72, 42
               

               
Conread position:
               
303-718
               

               
Cow position:
               
chr24:11734700-11734298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 72
               

               
Conread position:
               
328-715
               

               
Cow position:
               
chr24:3631460-3631080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 20
               

               
Conread position:
               
337-614
               

               
Cow position:
               
chr24:38347628-38347343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 132
               

               
Conread position:
               
338-646
               

               
Cow position:
               
chr24:27543535-27543844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 13
               

               
Conread position:
               
338-726
               

               
Cow position:
               
chr24:27763733-27763354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 36
               

               
Conread position:
               
346-719
               

               
Cow position:
               
chr24:27810121-27809738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
380-718
               

               
Cow position:
               
chr24:22193630-22193286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 280
               
Show alignments to all cow chromosomes.