Cow genome map
| Conread name: | Thy1-THY010085D12 |
| Conread position: | 324-702 |
| Cow position: | chr12:27439271-27438898 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 21 |
| Conread position: | 329-777 |
| Cow position: | chr12:24557991-24558438 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 16 |
| Conread position: | 329-837 |
| Cow position: | chr12:11582575-11583068 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 49 |
| Conread position: | 329-842 |
| Cow position: | chr12:15231446-15231940 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 16 |
| Conread position: | 329-842 |
| Cow position: | chr12:22686903-22687402 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 5 |
| Conread position: | 330-481 |
| Cow position: | chr12:14522793-14522950 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 56, 15 |
| Conread position: | 330-698 |
| Cow position: | chr12:25313297-25312931 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 17 |
| Conread position: | 330-732 |
| Cow position: | chr12:19714039-19713640 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 17 |
| Conread position: | 330-766 |
| Cow position: | chr12:25365606-25365185 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 15 |
| Conread position: | 330-786 |
| Cow position: | chr12:23378536-23378988 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 79 |
| Conread position: | 330-832 |
| Cow position: | chr12:43103228-43103729 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 212 |
| Conread position: | 331-842 |
| Cow position: | chr12:15259541-15259041 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 427, 17 |
| Conread position: | 334-616 |
| Cow position: | chr12:38774509-38774781 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 63, 11 |
| Conread position: | 334-842 |
| Cow position: | chr12:747418-747911 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 13 |
| Conread position: | 336-559 |
| Cow position: | chr12:29499264-29499046 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 45, 9 |
| Conread position: | 339-842 |
| Cow position: | chr12:17911353-17910855 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 160 |
| Conread position: | 344-842 |
| Cow position: | chr12:6627724-6628193 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 317 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 344-842 |
| Cow position: | chr12:8642181-8642691 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 102 |
| Conread position: | 345-460 |
| Cow position: | chr12:24205960-24206079 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 345-838 |
| Cow position: | chr12:27852220-27851739 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 0 |
| Conread position: | 347-511 |
| Cow position: | chr12:23039844-23039676 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 347-755 |
| Cow position: | chr12:47415237-47415642 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 116 |
| Conread position: | 347-829 |
| Cow position: | chr12:3716841-3716358 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 178 |
| Conread position: | 347-838 |
| Cow position: | chr12:15821153-15821634 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 181 |
| Conread position: | 347-842 |
| Cow position: | chr12:11082262-11082745 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 421, 42 |
| Conread position: | 347-842 |
| Cow position: | chr12:24029050-24028562 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 182 |
| Conread position: | 347-842 |
| Cow position: | chr12:31328897-31328411 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 106 |
| Conread position: | 348-838 |
| Cow position: | chr12:23137895-23137411 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 184 |
| Conread position: | 348-841 |
| Cow position: | chr12:3364320-3364806 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 180 |
| Conread position: | 348-841 |
| Cow position: | chr12:21212216-21212700 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 185 |
| Conread position: | 348-842 |
| Cow position: | chr12:17663382-17663879 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 126 |
| Conread position: | 350-839 |
| Cow position: | chr12:2234709-2234232 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 84 |
| Conread position: | 350-842 |
| Cow position: | chr12:32849000-32849491 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 188 |
| Conread position: | 369-838 |
| Cow position: | chr12:17981850-17982295 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 375-840 |
| Cow position: | chr12:24019932-24020394 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 152 |
| Conread position: | 385-842 |
| Cow position: | chr12:5146042-5146502 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 21 |
| Conread position: | 397-839 |
| Cow position: | chr12:14692174-14691758 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 303 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 150, 82 |
| Conread position: | 400-838 |
| Cow position: | chr12:3196489-3196916 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 409-842 |
| Cow position: | chr12:14522901-14523341 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 19 |
| Conread position: | 411-842 |
| Cow position: | chr12:21304872-21304466 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 416-841 |
| Cow position: | chr12:10442014-10442427 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 446-842 |
| Cow position: | chr12:11835524-11835914 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 462-838 |
| Cow position: | chr12:20480045-20479684 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 62 |
| Conread position: | 463-840 |
| Cow position: | chr12:18944346-18943985 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 57 |
| Conread position: | 468-842 |
| Cow position: | chr12:10461293-10461673 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 59 |
| Conread position: | 478-841 |
| Cow position: | chr12:32657160-32657511 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 481-833 |
| Cow position: | chr12:27094477-27094134 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 484-834 |
| Cow position: | chr12:38308665-38308328 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 522-839 |
| Cow position: | chr12:25606052-25606361 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 224 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 161, 44 |
| Conread position: | 540-839 |
| Cow position: | chr12:7001229-7000940 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 71 |
| Conread position: | 541-802 |
| Cow position: | chr12:24090166-24089918 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 541-842 |
| Cow position: | chr12:9893294-9892996 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 195 |
| Conread position: | 551-839 |
| Cow position: | chr12:31035224-31035505 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 125, 21 |
| Conread position: | 554-836 |
| Cow position: | chr12:21828457-21828746 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 129, 201 |
| Conread position: | 578-839 |
| Cow position: | chr12:28650327-28650585 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 159 |
| Conread position: | 585-839 |
| Cow position: | chr12:14580058-14579808 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 123, 118 |
| Conread position: | 587-842 |
| Cow position: | chr12:27365034-27365281 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 588-837 |
| Cow position: | chr12:11053772-11053531 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 588-841 |
| Cow position: | chr12:8523457-8523701 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 95, 145 |
| Conread position: | 588-842 |
| Cow position: | chr12:31430142-31429889 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 180, 0 |
| Conread position: | 590-842 |
| Cow position: | chr12:43945131-43944885 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 160 |
| Conread position: | 593-842 |
| Cow position: | chr12:39356743-39356984 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 596-841 |
| Cow position: | chr12:36013193-36012955 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 598-838 |
| Cow position: | chr12:23983049-23983282 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 230, 62 |
| Conread position: | 598-841 |
| Cow position: | chr12:35718616-35718392 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 607-840 |
| Cow position: | chr12:15034530-15034304 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 613-839 |
| Cow position: | chr12:22046942-22047150 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 622-812 |
| Cow position: | chr12:23909267-23909070 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 624-838 |
| Cow position: | chr12:38026603-38026393 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 60, 99 |
| Conread position: | 625-839 |
| Cow position: | chr12:20849117-20849326 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 165, 70 |
| Conread position: | 631-842 |
| Cow position: | chr12:29499007-29498799 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 159, 104 |
| Conread position: | 641-819 |
| Cow position: | chr12:4518767-4518595 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 651-841 |
| Cow position: | chr12:8487851-8487663 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 663-842 |
| Cow position: | chr12:27629360-27629186 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 682-842 |
| Cow position: | chr12:40824864-40824705 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 53 |
| Conread position: | 710-841 |
| Cow position: | chr12:45541273-45541406 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
Show alignments to all cow chromosomes.