Cow genome map

Conread name: Thy1-THY010085D12

Conread position: 329-806
Cow position: chr18:51272619-51272145 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 16

Conread position: 329-812
Cow position: chr18:5076668-5076188 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 19

Conread position: 329-836
Cow position: chr18:39002617-39002128 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 16

Conread position: 329-842
Cow position: chr18:25003692-25003204 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 16

Conread position: 330-522
Cow position: chr18:31996452-31996645 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 61, 15

Conread position: 330-837
Cow position: chr18:55001594-55001105 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 15

Conread position: 330-838
Cow position: chr18:55700002-55699500 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 15

Conread position: 330-839
Cow position: chr18:21768078-21767574 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 196

Conread position: 330-839
Cow position: chr18:50789243-50789742 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 15

Conread position: 330-842
Cow position: chr18:17335224-17334722 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 15

Conread position: 330-842
Cow position: chr18:32280484-32280971 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 330-842
Cow position: chr18:43464255-43463746 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 201

Conread position: 334-837
Cow position: chr18:48548344-48548824 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 334-839
Cow position: chr18:30232044-30231548 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 334-842
Cow position: chr18:16390708-16390205 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 21

Conread position: 336-829
Cow position: chr18:54629638-54629132 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 9

Conread position: 336-842
Cow position: chr18:36477298-36477825 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 111

Conread position: 337-788
Cow position: chr18:25972543-25972106 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 53

Conread position: 341-842
Cow position: chr18:27833901-27833406 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 71

Conread position: 342-842
Cow position: chr18:36648920-36649400 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 42

Conread position: 344-567
Cow position: chr18:41260903-41261117 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 157
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 29, 19

Conread position: 344-681
Cow position: chr18:40342318-40341977 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 187

Conread position: 344-794
Cow position: chr18:50225155-50224723 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 156

Conread position: 344-839
Cow position: chr18:40892466-40892942 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 43

Conread position: 344-840
Cow position: chr18:28530924-28530430 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 176

Conread position: 344-842
Cow position: chr18:30876743-30876252 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 153

Conread position: 345-711
Cow position: chr18:29797554-29797184 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 183

Conread position: 345-839
Cow position: chr18:16094416-16094893 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 0

Conread position: 346-561
Cow position: chr18:33503323-33503113 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 147
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 158, 142

Conread position: 346-842
Cow position: chr18:23716103-23715612 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 23

Conread position: 347-838
Cow position: chr18:7965472-7965940 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 14

Conread position: 347-841
Cow position: chr18:51679675-51679201 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 68

Conread position: 347-842
Cow position: chr18:43563415-43563901 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 148

Conread position: 348-822
Cow position: chr18:51459311-51458845 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 184

Conread position: 348-838
Cow position: chr18:40693769-40694253 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 41

Conread position: 348-839
Cow position: chr18:35443843-35443360 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 184

Conread position: 348-842
Cow position: chr18:7649185-7649665 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 181

Conread position: 348-842
Cow position: chr18:17341471-17341965 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 84

Conread position: 350-727
Cow position: chr18:21455621-21455985 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 256
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 36, 64

Conread position: 350-842
Cow position: chr18:32908099-32908575 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 13

Conread position: 351-841
Cow position: chr18:31563401-31562918 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 357-842
Cow position: chr18:1955328-1954851 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 173

Conread position: 361-841
Cow position: chr18:42080471-42079980 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 110

Conread position: 364-842
Cow position: chr18:14121284-14121755 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 0

Conread position: 366-842
Cow position: chr18:16135106-16134635 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 159

Conread position: 372-698
Cow position: chr18:10113557-10113876 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 0

Conread position: 377-838
Cow position: chr18:33272182-33272615 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 33

Conread position: 380-842
Cow position: chr18:42746805-42747260 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 88

Conread position: 382-838
Cow position: chr18:29030873-29030429 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 396-842
Cow position: chr18:54027179-54027615 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 131

Conread position: 398-842
Cow position: chr18:36907937-36907501 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 47

Conread position: 398-842
Cow position: chr18:36912463-36912027 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 47

Conread position: 412-842
Cow position: chr18:19645429-19645851 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 121

Conread position: 412-842
Cow position: chr18:28793829-28793399 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 117

Conread position: 423-841
Cow position: chr18:23656427-23656820 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 333, 55

Conread position: 433-842
Cow position: chr18:11368504-11368105 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 0

Conread position: 443-842
Cow position: chr18:10100739-10101136 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 84

Conread position: 444-842
Cow position: chr18:32859936-32860321 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 445-842
Cow position: chr18:29768198-29768587 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 86

Conread position: 454-840
Cow position: chr18:48450965-48451349 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 74

Conread position: 462-838
Cow position: chr18:20226828-20226477 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 263
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 118, 65

Conread position: 474-842
Cow position: chr18:14816024-14815662 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 493-842
Cow position: chr18:21682650-21682295 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 34

Conread position: 504-828
Cow position: chr18:33756234-33756552 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 23

Conread position: 529-838
Cow position: chr18:38090219-38089912 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 223
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 107, 211

Conread position: 530-821
Cow position: chr18:39269120-39268834 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 201
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 43, 34

Conread position: 535-842
Cow position: chr18:4579116-4578821 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 536-823
Cow position: chr18:21106771-21106498 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 202
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 74, 0

Conread position: 544-840
Cow position: chr18:24635408-24635697 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 208
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 189, 40

Conread position: 551-842
Cow position: chr18:45478326-45478606 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 207
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 17, 140

Conread position: 559-842
Cow position: chr18:19990603-19990880 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 185
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 92, 10

Conread position: 570-840
Cow position: chr18:24342035-24342297 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 194
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 7, 174

Conread position: 575-833
Cow position: chr18:18831453-18831702 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 180
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 146, 0

Conread position: 576-791
Cow position: chr18:53962989-53962778 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 166
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 115, 160

Conread position: 576-838
Cow position: chr18:55692229-55692491 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 182
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 206, 198

Conread position: 576-841
Cow position: chr18:55697611-55697343 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 21

Conread position: 576-842
Cow position: chr18:23137801-23137537 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 194
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 68, 162

Conread position: 588-842
Cow position: chr18:10112432-10112678 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 186
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 147, 0

Conread position: 590-840
Cow position: chr18:11376797-11377042 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 595-841
Cow position: chr18:51500653-51500405 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 64, 239

Conread position: 595-842
Cow position: chr18:54031141-54031383 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 191
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 30, 20

Conread position: 600-842
Cow position: chr18:42249741-42249505 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 173
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 153, 0

Conread position: 601-842
Cow position: chr18:22065924-22065688 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 0

Conread position: 604-841
Cow position: chr18:51443982-51443756 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 32, 0

Conread position: 608-823
Cow position: chr18:26536057-26535846 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 87, 128

Conread position: 612-822
Cow position: chr18:13877281-13877076 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 151
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 12, 73

Conread position: 618-823
Cow position: chr18:36265358-36265158 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 115, 0

Conread position: 619-842
Cow position: chr18:29241096-29241317 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 157
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 127, 43

Conread position: 620-838
Cow position: chr18:4978108-4977897 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 157
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 63, 38

Conread position: 623-842
Cow position: chr18:26844190-26843973 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 15, 0

Conread position: 627-841
Cow position: chr18:17757435-17757229 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 21, 0

Conread position: 628-838
Cow position: chr18:54928583-54928384 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 107, 0

Conread position: 631-817
Cow position: chr18:31673035-31672853 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 131
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 52, 105

Conread position: 639-841
Cow position: chr18:41072340-41072539 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 155
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 44, 143

Conread position: 640-842
Cow position: chr18:54574836-54574640 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 130, 92

Conread position: 642-842
Cow position: chr18:33793182-33793377 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 151
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 92, 0

Conread position: 646-842
Cow position: chr18:24021879-24022064 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 89, 0

Conread position: 651-839
Cow position: chr18:27079727-27079909 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 52, 13

Conread position: 658-842
Cow position: chr18:37339391-37339209 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 146
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 75, 0

Conread position: 666-842
Cow position: chr18:38343697-38343864 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 682-842
Cow position: chr18:40261489-40261334 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 690-840
Cow position: chr18:4765769-4765624 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 691-842
Cow position: chr18:38794482-38794327 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 48, 0

Conread position: 694-838
Cow position: chr18:24672132-24671994 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 0

Show alignments to all cow chromosomes.