Cow genome map

Conread name: Thy1-THY010085D12

Conread position: 328-837
Cow position: chr21:12802516-12802017 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 20

Conread position: 328-837
Cow position: chr21:46241927-46241430 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 307
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 199, 13

Conread position: 328-842
Cow position: chr21:7155967-7156477 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 13

Conread position: 329-589
Cow position: chr21:39764119-39764371 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 195
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 56, 16

Conread position: 329-842
Cow position: chr21:28988878-28989388 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 23

Conread position: 330-813
Cow position: chr21:34142134-34141678 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 330-838
Cow position: chr21:6619766-6619278 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 15

Conread position: 330-841
Cow position: chr21:32814541-32814041 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 15

Conread position: 331-842
Cow position: chr21:24697754-24698251 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 14

Conread position: 331-842
Cow position: chr21:44804977-44804491 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 14

Conread position: 334-610
Cow position: chr21:42842689-42842404 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 211
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 54, 11

Conread position: 334-621
Cow position: chr21:4191893-4192183 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 203
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 49, 11

Conread position: 334-828
Cow position: chr21:45782132-45781651 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 13

Conread position: 334-840
Cow position: chr21:8274903-8274415 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 11

Conread position: 334-841
Cow position: chr21:15585125-15584631 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 11

Conread position: 334-842
Cow position: chr21:27864256-27863750 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 11

Conread position: 335-838
Cow position: chr21:21000780-21000285 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 10

Conread position: 335-842
Cow position: chr21:24887245-24887765 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 36

Conread position: 335-842
Cow position: chr21:29253592-29253112 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 432, 10

Conread position: 335-842
Cow position: chr21:48262416-48262905 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 10

Conread position: 341-784
Cow position: chr21:22092913-22093361 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 335

Conread position: 344-654
Cow position: chr21:40454567-40454267 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 221
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 42, 133

Conread position: 344-841
Cow position: chr21:29942282-29942769 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 60

Conread position: 345-842
Cow position: chr21:42558384-42558873 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 185

Conread position: 347-838
Cow position: chr21:44861985-44861490 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 190

Conread position: 347-839
Cow position: chr21:16890228-16889748 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 0

Conread position: 347-840
Cow position: chr21:470904-471398 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 135

Conread position: 347-841
Cow position: chr21:18819021-18818562 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 331
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 34, 0

Conread position: 347-841
Cow position: chr21:37923788-37924281 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 185

Conread position: 347-841
Cow position: chr21:49470238-49470716 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 313
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 33, 65

Conread position: 347-842
Cow position: chr21:13111510-13111028 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 91

Conread position: 347-842
Cow position: chr21:33832364-33831875 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 159

Conread position: 347-842
Cow position: chr21:47428955-47429439 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 68

Conread position: 348-838
Cow position: chr21:20243987-20243523 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 96

Conread position: 348-839
Cow position: chr21:4898351-4897887 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 348-841
Cow position: chr21:18574136-18574612 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 20

Conread position: 365-842
Cow position: chr21:23293854-23293386 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 10

Conread position: 374-835
Cow position: chr21:33307612-33308057 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 15

Conread position: 378-841
Cow position: chr21:31575834-31576282 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 137

Conread position: 381-823
Cow position: chr21:1058119-1058554 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 148

Conread position: 381-823
Cow position: chr21:6365524-6365952 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 104

Conread position: 381-842
Cow position: chr21:26831117-26831555 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 310
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 60, 104

Conread position: 381-842
Cow position: chr21:28026457-28026895 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 381-842
Cow position: chr21:28810930-28810480 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 27

Conread position: 382-842
Cow position: chr21:1765888-1765431 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 148

Conread position: 388-838
Cow position: chr21:35389492-35389056 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 135

Conread position: 396-838
Cow position: chr21:37322951-37322527 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 33

Conread position: 398-821
Cow position: chr21:9863273-9862873 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 94

Conread position: 406-842
Cow position: chr21:36680055-36680480 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 274
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 58, 0

Conread position: 419-838
Cow position: chr21:39400951-39401365 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 109

Conread position: 428-828
Cow position: chr21:13070496-13070105 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 0

Conread position: 441-842
Cow position: chr21:27263685-27264070 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 95

Conread position: 464-842
Cow position: chr21:19437000-19436629 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 63

Conread position: 477-842
Cow position: chr21:42464419-42464072 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 248
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 50, 0

Conread position: 481-840
Cow position: chr21:13897611-13897960 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 46

Conread position: 487-823
Cow position: chr21:47532457-47532792 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 40

Conread position: 489-842
Cow position: chr21:4123887-4123542 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 239
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 62, 39

Conread position: 490-822
Cow position: chr21:24674182-24674495 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 232
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 84, 37

Conread position: 491-842
Cow position: chr21:26557621-26557289 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 246
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 76, 36

Conread position: 492-839
Cow position: chr21:37942254-37941916 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 35

Conread position: 494-838
Cow position: chr21:36657002-36657345 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 33

Conread position: 498-823
Cow position: chr21:4722881-4723181 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 237
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 225, 16

Conread position: 512-779
Cow position: chr21:23489880-23489616 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 526-838
Cow position: chr21:30151160-30150853 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 64

Conread position: 537-822
Cow position: chr21:25782254-25781967 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 197
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 7, 123

Conread position: 538-842
Cow position: chr21:15933156-15933453 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 203
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 59, 28

Conread position: 539-842
Cow position: chr21:44219706-44220004 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 0

Conread position: 543-842
Cow position: chr21:1590742-1591038 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 107

Conread position: 543-842
Cow position: chr21:29785627-29785920 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 545-839
Cow position: chr21:28944940-28944640 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 35

Conread position: 546-842
Cow position: chr21:47823786-47823498 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 10

Conread position: 550-841
Cow position: chr21:19766337-19766622 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 198
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 16, 0

Conread position: 555-841
Cow position: chr21:23683031-23683318 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 212
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 57, 212

Conread position: 557-842
Cow position: chr21:39640810-39641081 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 192
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 102, 0

Conread position: 558-839
Cow position: chr21:46134454-46134730 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 181
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 84, 175

Conread position: 575-842
Cow position: chr21:10514325-10514581 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 192
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 10, 19

Conread position: 588-840
Cow position: chr21:29839692-29839933 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 190
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 59, 0

Conread position: 588-841
Cow position: chr21:36399252-36399499 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 175
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 107, 0

Conread position: 588-842
Cow position: chr21:19882389-19882140 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 179
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 136, 0

Conread position: 590-841
Cow position: chr21:12465878-12466124 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 165, 0

Conread position: 591-823
Cow position: chr21:13395083-13395306 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 171
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 48, 97

Conread position: 595-842
Cow position: chr21:20549389-20549149 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 154

Conread position: 602-822
Cow position: chr21:29015621-29015410 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 84, 133

Conread position: 604-840
Cow position: chr21:7672665-7672900 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 170
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 18, 0

Conread position: 604-840
Cow position: chr21:46912085-46912311 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 172
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 129, 0

Conread position: 604-841
Cow position: chr21:45354979-45355211 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 178
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 139, 0

Conread position: 605-842
Cow position: chr21:12313844-12314076 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 162
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 127, 0

Conread position: 608-842
Cow position: chr21:6051023-6051252 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 140, 0

Conread position: 613-841
Cow position: chr21:25799916-25800137 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 620-842
Cow position: chr21:30000024-29999812 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 161
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 23, 125

Conread position: 627-842
Cow position: chr21:14762949-14762740 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 151
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 107, 0

Conread position: 628-839
Cow position: chr21:5566544-5566757 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 160
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 55, 0

Conread position: 640-842
Cow position: chr21:31510925-31511133 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 146
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 86, 123

Conread position: 643-842
Cow position: chr21:5455408-5455217 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 80, 5

Conread position: 658-842
Cow position: chr21:17219023-17218845 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 90, 0

Conread position: 662-842
Cow position: chr21:37719940-37719758 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 141
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 93, 0

Conread position: 678-839
Cow position: chr21:46830531-46830377 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 679-842
Cow position: chr21:8290026-8289872 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 739-842
Cow position: chr21:38628045-38628148 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 84
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.