Cow genome map

Conread name: Thy1-THY010085D12

Conread position: 329-733
Cow position: chr23:15505148-15505547 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 16

Conread position: 329-780
Cow position: chr23:11405270-11404823 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 19

Conread position: 329-836
Cow position: chr23:29271311-29271805 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 16

Conread position: 329-841
Cow position: chr23:11078693-11079192 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 16

Conread position: 329-842
Cow position: chr23:23470138-23470658 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 18

Conread position: 330-643
Cow position: chr23:26066330-26066638 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 330-698
Cow position: chr23:8277423-8277056 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 15

Conread position: 330-806
Cow position: chr23:35324816-35324381 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 323
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 71, 15

Conread position: 330-838
Cow position: chr23:9393464-9392973 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 15

Conread position: 331-561
Cow position: chr23:25554009-25554240 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 181
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 55, 14

Conread position: 331-842
Cow position: chr23:11814444-11813934 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 14

Conread position: 334-548
Cow position: chr23:14839768-14839558 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 155
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 52, 11

Conread position: 334-690
Cow position: chr23:26840589-26840954 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 11

Conread position: 334-820
Cow position: chr23:29699880-29699409 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 19

Conread position: 334-839
Cow position: chr23:26305589-26306079 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 11

Conread position: 336-840
Cow position: chr23:11343918-11344409 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 0

Conread position: 344-788
Cow position: chr23:8100669-8101085 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 304
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 137, 72

Conread position: 345-516
Cow position: chr23:36748498-36748326 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 128, 0

Conread position: 347-561
Cow position: chr23:25670342-25670127 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 164
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 121, 181

Conread position: 347-755
Cow position: chr23:5624147-5623734 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 86

Conread position: 347-842
Cow position: chr23:8290886-8291377 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 97

Conread position: 348-620
Cow position: chr23:28546260-28545981 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 130

Conread position: 349-822
Cow position: chr23:2408781-2408316 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 183

Conread position: 350-842
Cow position: chr23:18446486-18446970 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 314
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 36, 95

Conread position: 352-842
Cow position: chr23:9712373-9711896 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 173

Conread position: 355-842
Cow position: chr23:25565433-25565909 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 165

Conread position: 381-839
Cow position: chr23:2532059-2531629 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 63

Conread position: 381-841
Cow position: chr23:19966888-19967338 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 386, 64

Conread position: 381-842
Cow position: chr23:16238108-16237649 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 149

Conread position: 382-822
Cow position: chr23:6593457-6593023 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 0

Conread position: 384-841
Cow position: chr23:977576-977132 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 0

Conread position: 384-842
Cow position: chr23:19002817-19002361 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 147

Conread position: 389-839
Cow position: chr23:1535597-1536026 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 24

Conread position: 399-822
Cow position: chr23:31395641-31395242 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 287
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 14, 0

Conread position: 399-839
Cow position: chr23:28830700-28831104 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 302
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 263, 9

Conread position: 400-841
Cow position: chr23:11459753-11459316 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 334, 127

Conread position: 410-842
Cow position: chr23:27899643-27900064 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 423-841
Cow position: chr23:30913011-30912596 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 75

Conread position: 428-842
Cow position: chr23:36014399-36014789 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 275
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 48, 100

Conread position: 455-842
Cow position: chr23:21343973-21343590 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 73

Conread position: 459-842
Cow position: chr23:21659281-21659668 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 33

Conread position: 477-841
Cow position: chr23:16072583-16072936 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 50

Conread position: 490-842
Cow position: chr23:16610433-16610103 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 30

Conread position: 498-821
Cow position: chr23:3715159-3715471 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 503-842
Cow position: chr23:9642031-9641709 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 509-842
Cow position: chr23:416551-416877 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 49

Conread position: 517-838
Cow position: chr23:4067521-4067828 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 223
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 10, 0

Conread position: 518-841
Cow position: chr23:8446555-8446244 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 222
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 42, 10

Conread position: 526-842
Cow position: chr23:30656754-30656450 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 538-842
Cow position: chr23:14566318-14566016 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 209

Conread position: 538-842
Cow position: chr23:36462906-36462605 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 30

Conread position: 540-842
Cow position: chr23:14839336-14839025 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 219
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 136, 0

Conread position: 541-840
Cow position: chr23:33940717-33940428 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 0

Conread position: 548-842
Cow position: chr23:11993796-11994085 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 0

Conread position: 556-842
Cow position: chr23:20435631-20435345 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 204
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 152, 147

Conread position: 576-823
Cow position: chr23:21630662-21630903 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 183
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 153, 0

Conread position: 585-831
Cow position: chr23:19166478-19166711 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 179
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 34, 80

Conread position: 585-842
Cow position: chr23:24613189-24613450 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 200
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 43, 110

Conread position: 588-832
Cow position: chr23:16170157-16170394 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 27

Conread position: 588-842
Cow position: chr23:37191120-37190869 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 157

Conread position: 593-804
Cow position: chr23:29033710-29033912 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 161
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 152, 0

Conread position: 594-842
Cow position: chr23:40890484-40890723 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 189
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 215, 20

Conread position: 596-842
Cow position: chr23:9653046-9652808 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 183
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 53, 9

Conread position: 600-841
Cow position: chr23:40371124-40370891 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 159
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 603-820
Cow position: chr23:1670398-1670606 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 165
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 40, 22

Conread position: 604-823
Cow position: chr23:22582359-22582575 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 93, 123

Conread position: 605-841
Cow position: chr23:3873592-3873367 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 167
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 127, 0

Conread position: 606-822
Cow position: chr23:11973338-11973548 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 158
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 52, 0

Conread position: 617-836
Cow position: chr23:15710586-15710376 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 172
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 97, 0

Conread position: 617-842
Cow position: chr23:20781261-20781486 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 176
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 31, 82

Conread position: 621-839
Cow position: chr23:770790-770583 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 204, 104

Conread position: 621-842
Cow position: chr23:11564860-11564643 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 167
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 114, 0

Conread position: 624-842
Cow position: chr23:25554505-25554715 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 166
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 84, 64

Conread position: 627-821
Cow position: chr23:13359087-13359274 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 153
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 45, 0

Conread position: 633-841
Cow position: chr23:24562377-24562178 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 7, 0

Conread position: 635-792
Cow position: chr23:3745118-3745270 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 113, 0

Conread position: 637-789
Cow position: chr23:8930825-8930679 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 74, 53

Conread position: 641-802
Cow position: chr23:21445157-21445313 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 107, 0

Conread position: 641-840
Cow position: chr23:497090-496894 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 16, 104

Conread position: 650-838
Cow position: chr23:1924310-1924130 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 652-836
Cow position: chr23:25358215-25358392 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 140
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 41, 0

Conread position: 656-841
Cow position: chr23:5691238-5691048 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 134
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 87, 0

Conread position: 656-842
Cow position: chr23:35926130-35926306 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 87, 0

Conread position: 665-842
Cow position: chr23:27523737-27523565 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 78, 0

Conread position: 670-825
Cow position: chr23:28700520-28700671 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 60, 74

Conread position: 685-842
Cow position: chr23:32662356-32662203 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 139, 68

Conread position: 689-842
Cow position: chr23:24504808-24504956 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 46, 0

Conread position: 711-842
Cow position: chr23:11434686-11434560 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 37, 0

Show alignments to all cow chromosomes.