Cow genome map

Conread name: Thy1-THY010085D12

Conread position: 329-548
Cow position: chr24:7404414-7404194 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 170
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 56, 16

Conread position: 329-696
Cow position: chr24:30765831-30766183 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 16

Conread position: 329-842
Cow position: chr24:6508631-6508111 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 16

Conread position: 329-842
Cow position: chr24:29064461-29063962 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 16

Conread position: 330-815
Cow position: chr24:39122954-39123400 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 59

Conread position: 330-818
Cow position: chr24:13299301-13298820 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 18

Conread position: 330-838
Cow position: chr24:16056356-16055856 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 15

Conread position: 330-838
Cow position: chr24:26847097-26846600 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 15

Conread position: 330-842
Cow position: chr24:25110758-25111260 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 12

Conread position: 330-842
Cow position: chr24:39501089-39500597 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 17

Conread position: 331-822
Cow position: chr24:32759611-32759124 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 14

Conread position: 334-549
Cow position: chr24:31357103-31357315 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 163
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 11, 0

Conread position: 334-788
Cow position: chr24:6666269-6665850 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 334-841
Cow position: chr24:25677223-25677712 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 334-841
Cow position: chr24:41062967-41063472 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 11

Conread position: 334-842
Cow position: chr24:32608824-32609319 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 11

Conread position: 341-746
Cow position: chr24:6415681-6416088 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 192

Conread position: 343-822
Cow position: chr24:42938440-42937978 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 0

Conread position: 344-570
Cow position: chr24:18630016-18630240 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 157
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 206, 71

Conread position: 344-694
Cow position: chr24:40347553-40347205 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 64

Conread position: 344-720
Cow position: chr24:19509873-19509496 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 62

Conread position: 344-743
Cow position: chr24:19040628-19040252 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 266
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 35, 68

Conread position: 345-839
Cow position: chr24:11886353-11886840 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 97

Conread position: 345-841
Cow position: chr24:10244038-10243550 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 12

Conread position: 345-842
Cow position: chr24:17105353-17104883 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 100

Conread position: 347-685
Cow position: chr24:45087048-45087388 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 184

Conread position: 347-754
Cow position: chr24:25543671-25543275 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 75

Conread position: 347-755
Cow position: chr24:31370763-31370355 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 336, 98

Conread position: 347-838
Cow position: chr24:18222954-18222487 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 154

Conread position: 348-839
Cow position: chr24:11839380-11839858 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 95

Conread position: 348-842
Cow position: chr24:35568379-35568870 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 22

Conread position: 350-698
Cow position: chr24:42944149-42943800 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 99

Conread position: 357-788
Cow position: chr24:2074153-2074570 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 54

Conread position: 357-842
Cow position: chr24:37387153-37386677 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 167

Conread position: 363-840
Cow position: chr24:16401867-16401415 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 364-842
Cow position: chr24:33239334-33238868 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 339, 76

Conread position: 373-842
Cow position: chr24:15372347-15372804 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 64

Conread position: 374-842
Cow position: chr24:41487430-41487869 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 304
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 173, 30

Conread position: 381-840
Cow position: chr24:14760461-14760909 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 148

Conread position: 384-842
Cow position: chr24:7138252-7138685 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 298
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 51, 20

Conread position: 385-839
Cow position: chr24:11876118-11876561 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 142

Conread position: 403-842
Cow position: chr24:36721988-36722412 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 55

Conread position: 406-842
Cow position: chr24:44989370-44988939 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 122

Conread position: 415-842
Cow position: chr24:14914266-14913857 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 112

Conread position: 419-842
Cow position: chr24:19815813-19815403 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 9

Conread position: 428-842
Cow position: chr24:12207722-12207313 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 265
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 99, 0

Conread position: 429-837
Cow position: chr24:41333611-41333202 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 100

Conread position: 430-807
Cow position: chr24:16243352-16242988 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 432-839
Cow position: chr24:37081097-37080703 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 15

Conread position: 440-827
Cow position: chr24:16268943-16268567 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 54

Conread position: 440-842
Cow position: chr24:28723717-28724115 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 87

Conread position: 443-840
Cow position: chr24:37036908-37037293 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 379, 85

Conread position: 450-842
Cow position: chr24:16483236-16482845 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 266
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 88, 77

Conread position: 482-838
Cow position: chr24:9088134-9087795 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 45

Conread position: 487-842
Cow position: chr24:8020904-8021257 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 41

Conread position: 488-841
Cow position: chr24:20220860-20221200 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 498-836
Cow position: chr24:30484583-30484259 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 498-840
Cow position: chr24:37946502-37946165 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 29

Conread position: 498-842
Cow position: chr24:17834095-17833763 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 30

Conread position: 501-839
Cow position: chr24:8886234-8886566 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 26

Conread position: 505-842
Cow position: chr24:25229726-25229393 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 50

Conread position: 507-842
Cow position: chr24:28336199-28335861 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 20

Conread position: 510-842
Cow position: chr24:33371920-33372243 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 230
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 176, 17

Conread position: 519-835
Cow position: chr24:10554026-10554326 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 223
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 8, 0

Conread position: 535-822
Cow position: chr24:15036458-15036734 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 208
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 149, 18

Conread position: 535-842
Cow position: chr24:39681250-39681551 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 542-842
Cow position: chr24:2391576-2391872 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 212
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 28, 22

Conread position: 545-823
Cow position: chr24:39955893-39955611 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 205

Conread position: 549-838
Cow position: chr24:28721295-28721557 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 203
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 18, 0

Conread position: 552-837
Cow position: chr24:33099085-33098811 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 203
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 139, 0

Conread position: 552-842
Cow position: chr24:32370515-32370230 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 203
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 12, 109

Conread position: 558-838
Cow position: chr24:32070070-32070345 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 0

Conread position: 558-839
Cow position: chr24:34329055-34329330 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 195
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 175, 0

Conread position: 562-842
Cow position: chr24:6341574-6341850 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 189

Conread position: 569-841
Cow position: chr24:15344521-15344789 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 181
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 152, 0

Conread position: 579-842
Cow position: chr24:9071002-9070754 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 191
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 37, 12

Conread position: 579-842
Cow position: chr24:32158840-32158586 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 196
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 55, 0

Conread position: 590-820
Cow position: chr24:40213650-40213417 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 207

Conread position: 594-838
Cow position: chr24:19321799-19321562 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 160
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 600-841
Cow position: chr24:16844885-16844651 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 171
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 105, 0

Conread position: 602-840
Cow position: chr24:40056267-40056036 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 181
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 133, 0

Conread position: 605-841
Cow position: chr24:27564254-27564012 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 181
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 119, 0

Conread position: 613-840
Cow position: chr24:39238263-39238477 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 164
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 24, 0

Conread position: 618-819
Cow position: chr24:16400448-16400258 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 85, 0

Conread position: 628-842
Cow position: chr24:40184051-40184260 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 107, 0

Conread position: 654-838
Cow position: chr24:16232756-16232574 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 43, 34

Conread position: 663-840
Cow position: chr24:30545372-30545200 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 85, 0

Conread position: 664-823
Cow position: chr24:27259420-27259266 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 20, 80

Conread position: 673-842
Cow position: chr24:18331208-18331371 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 62, 0

Conread position: 685-842
Cow position: chr24:20862444-20862280 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 688-842
Cow position: chr24:12991852-12992001 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 689-842
Cow position: chr24:30018022-30017874 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 59, 0

Conread position: 689-842
Cow position: chr24:30766407-30766554 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 54, 0

Conread position: 693-841
Cow position: chr24:24310503-24310646 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 695-842
Cow position: chr24:42943606-42943467 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 51, 0

Show alignments to all cow chromosomes.