Cow genome map
| Conread name: | Thy1-THY010085D12 |
| Conread position: | 325-840 |
| Cow position: | chr25:5568573-5568059 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 7 |
| Conread position: | 326-836 |
| Cow position: | chr25:21903640-21904142 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 19 |
| Conread position: | 329-823 |
| Cow position: | chr25:10012857-10012369 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 16 |
| Conread position: | 329-839 |
| Cow position: | chr25:24303062-24302554 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 16 |
| Conread position: | 329-841 |
| Cow position: | chr25:33838581-33839090 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 16 |
| Conread position: | 329-842 |
| Cow position: | chr25:11929356-11928853 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 5 |
| Conread position: | 329-842 |
| Cow position: | chr25:35613131-35612630 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 16 |
| Conread position: | 330-511 |
| Cow position: | chr25:747657-747836 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 54, 11 |
| Conread position: | 330-838 |
| Cow position: | chr25:16430812-16430323 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 15 |
| Conread position: | 330-838 |
| Cow position: | chr25:24636937-24636435 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 15 |
| Conread position: | 332-578 |
| Cow position: | chr25:11662577-11662328 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 334-620 |
| Cow position: | chr25:18129410-18129692 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 334-821 |
| Cow position: | chr25:22760103-22760579 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 334-839 |
| Cow position: | chr25:33979199-33978708 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 11 |
| Conread position: | 334-842 |
| Cow position: | chr25:24213829-24213326 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 11 |
| Conread position: | 336-842 |
| Cow position: | chr25:20495756-20496242 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 9 |
| Conread position: | 337-842 |
| Cow position: | chr25:29313109-29312604 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 8 |
| Conread position: | 341-812 |
| Cow position: | chr25:28264564-28265023 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 176 |
| Conread position: | 341-842 |
| Cow position: | chr25:1950876-1951375 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 137 |
| Conread position: | 344-822 |
| Cow position: | chr25:18424514-18424973 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 124 |
| Conread position: | 344-838 |
| Cow position: | chr25:9044746-9045230 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 323 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 344-839 |
| Cow position: | chr25:36512493-36513011 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 189 |
| Conread position: | 347-470 |
| Cow position: | chr25:24776578-24776701 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 347-513 |
| Cow position: | chr25:19682504-19682680 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 347-776 |
| Cow position: | chr25:13005495-13005073 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 37, 63 |
| Conread position: | 347-841 |
| Cow position: | chr25:23672642-23672173 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 103 |
| Conread position: | 347-841 |
| Cow position: | chr25:23740020-23739548 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 106 |
| Conread position: | 347-842 |
| Cow position: | chr25:11665885-11666370 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 95 |
| Conread position: | 348-841 |
| Cow position: | chr25:35589300-35589777 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 184 |
| Conread position: | 374-842 |
| Cow position: | chr25:13332669-13333126 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 15 |
| Conread position: | 411-838 |
| Cow position: | chr25:38190226-38190646 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 117 |
| Conread position: | 420-842 |
| Cow position: | chr25:169320-169718 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 66 |
| Conread position: | 428-783 |
| Cow position: | chr25:23772971-23772625 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 138 |
| Conread position: | 446-838 |
| Cow position: | chr25:5611127-5611512 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 258 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 238, 82 |
| Conread position: | 460-841 |
| Cow position: | chr25:35649170-35649540 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 69 |
| Conread position: | 461-842 |
| Cow position: | chr25:23409992-23410368 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 489-842 |
| Cow position: | chr25:394711-395060 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 500-842 |
| Cow position: | chr25:38357503-38357827 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 132, 29 |
| Conread position: | 509-838 |
| Cow position: | chr25:12841706-12841383 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 511-842 |
| Cow position: | chr25:37687767-37687454 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 526-842 |
| Cow position: | chr25:9395847-9396158 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 0 |
| Conread position: | 537-788 |
| Cow position: | chr25:24222564-24222319 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 177, 0 |
| Conread position: | 539-834 |
| Cow position: | chr25:10749088-10748805 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 48, 84 |
| Conread position: | 545-840 |
| Cow position: | chr25:28188564-28188282 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 264, 80 |
| Conread position: | 554-842 |
| Cow position: | chr25:27510833-27510555 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 213 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 129, 9 |
| Conread position: | 555-842 |
| Cow position: | chr25:20394626-20394910 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 0 |
| Conread position: | 590-842 |
| Cow position: | chr25:26869624-26869863 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 592-823 |
| Cow position: | chr25:24136993-24136759 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 604-836 |
| Cow position: | chr25:7479037-7479280 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 610-842 |
| Cow position: | chr25:5155002-5154775 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 618-838 |
| Cow position: | chr25:9349774-9349558 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 151, 115 |
| Conread position: | 618-842 |
| Cow position: | chr25:10633224-10632995 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 125, 15 |
| Conread position: | 618-842 |
| Cow position: | chr25:36778989-36779199 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 636-839 |
| Cow position: | chr25:13569664-13569467 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 641-841 |
| Cow position: | chr25:35296269-35296075 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 645-838 |
| Cow position: | chr25:25866445-25866634 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 645-840 |
| Cow position: | chr25:18160828-18161012 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 123, 43 |
| Conread position: | 647-798 |
| Cow position: | chr25:13796736-13796883 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 143, 85 |
| Conread position: | 649-831 |
| Cow position: | chr25:13472244-13472066 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 654-823 |
| Cow position: | chr25:8576218-8576384 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 29, 82 |
| Conread position: | 672-842 |
| Cow position: | chr25:14225258-14225093 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 674-842 |
| Cow position: | chr25:8512854-8512678 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 67, 165 |
Show alignments to all cow chromosomes.