Cow genome map

Conread name: Thy1-THY010085D12

Conread position: 272-837
Cow position: chr28:19552974-19552420 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 21

Conread position: 325-842
Cow position: chr28:8070839-8070335 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 16

Conread position: 329-492
Cow position: chr28:3653065-3653225 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 128
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 155, 16

Conread position: 329-726
Cow position: chr28:17209518-17209126 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 18

Conread position: 329-791
Cow position: chr28:24499512-24499963 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 101

Conread position: 329-822
Cow position: chr28:18145270-18144786 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 18

Conread position: 329-841
Cow position: chr28:15273049-15272549 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 12

Conread position: 329-842
Cow position: chr28:3001397-3000900 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 16

Conread position: 329-842
Cow position: chr28:5804728-5805230 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 16

Conread position: 329-842
Cow position: chr28:12081468-12080962 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 16

Conread position: 329-842
Cow position: chr28:13865013-13865516 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 16

Conread position: 329-842
Cow position: chr28:17602579-17602073 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 16

Conread position: 329-842
Cow position: chr28:23794118-23793608 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 16

Conread position: 330-507
Cow position: chr28:23467371-23467552 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 56, 15

Conread position: 330-572
Cow position: chr28:23800725-23800967 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 185
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 55, 15

Conread position: 330-614
Cow position: chr28:30961001-30961280 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 212
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 54, 15

Conread position: 330-837
Cow position: chr28:5117361-5117862 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 101

Conread position: 330-838
Cow position: chr28:22279973-22279474 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 15

Conread position: 330-838
Cow position: chr28:30966664-30967174 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 15

Conread position: 330-842
Cow position: chr28:13692942-13693460 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 15

Conread position: 330-842
Cow position: chr28:13881003-13881519 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 15

Conread position: 330-842
Cow position: chr28:15429128-15429632 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 15

Conread position: 330-842
Cow position: chr28:21569361-21569867 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 464, 15

Conread position: 331-838
Cow position: chr28:17599521-17599016 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 14

Conread position: 331-842
Cow position: chr28:15677099-15677611 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 348
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 56, 10

Conread position: 334-500
Cow position: chr28:10643076-10642908 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 135
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 52, 9

Conread position: 334-510
Cow position: chr28:2123028-2123200 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 44, 11

Conread position: 334-623
Cow position: chr28:3012721-3012428 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 208
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 55, 11

Conread position: 334-820
Cow position: chr28:23620409-23620874 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 11

Conread position: 334-822
Cow position: chr28:5772875-5773354 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 11

Conread position: 335-841
Cow position: chr28:22201416-22201896 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 10

Conread position: 335-842
Cow position: chr28:1550309-1550811 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 10

Conread position: 335-842
Cow position: chr28:11356724-11356213 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 200

Conread position: 341-839
Cow position: chr28:10612350-10611864 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 32

Conread position: 344-637
Cow position: chr28:3921170-3921463 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 190
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 26, 19

Conread position: 344-840
Cow position: chr28:3068356-3068860 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 19

Conread position: 345-823
Cow position: chr28:26923152-26922678 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 69

Conread position: 346-568
Cow position: chr28:22307656-22307873 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 11, 119

Conread position: 346-841
Cow position: chr28:17151560-17152049 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 109

Conread position: 347-754
Cow position: chr28:30532515-30532108 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 54

Conread position: 347-836
Cow position: chr28:13606909-13607412 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 201

Conread position: 347-838
Cow position: chr28:5940965-5941449 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 125

Conread position: 347-840
Cow position: chr28:26102937-26103442 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 75

Conread position: 347-840
Cow position: chr28:29726397-29726880 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 181

Conread position: 347-841
Cow position: chr28:14150467-14150948 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 97

Conread position: 347-842
Cow position: chr28:24671500-24671984 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 126

Conread position: 347-842
Cow position: chr28:25248598-25249084 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 185

Conread position: 348-840
Cow position: chr28:20967189-20966698 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 184

Conread position: 348-842
Cow position: chr28:6319671-6319197 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 184

Conread position: 349-740
Cow position: chr28:3745436-3745824 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 0

Conread position: 349-841
Cow position: chr28:7697764-7697286 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 180

Conread position: 352-837
Cow position: chr28:16215654-16215185 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 179

Conread position: 374-842
Cow position: chr28:31842429-31841971 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 155

Conread position: 384-842
Cow position: chr28:30077146-30077593 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 25

Conread position: 385-841
Cow position: chr28:23026044-23026499 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 140

Conread position: 395-838
Cow position: chr28:24737289-24737728 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 134

Conread position: 398-831
Cow position: chr28:5817135-5817552 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 18

Conread position: 434-842
Cow position: chr28:3024611-3024198 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 95

Conread position: 447-822
Cow position: chr28:961914-962287 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 68

Conread position: 448-842
Cow position: chr28:7596065-7595675 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 81

Conread position: 454-841
Cow position: chr28:12998215-12998587 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 456-842
Cow position: chr28:29392340-29392713 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 462-807
Cow position: chr28:18180789-18180451 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 480-842
Cow position: chr28:10642650-10642305 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 485-801
Cow position: chr28:15935272-15934966 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 498-842
Cow position: chr28:10900201-10900531 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 498-842
Cow position: chr28:25314559-25314892 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 30

Conread position: 498-842
Cow position: chr28:28077090-28076752 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 29

Conread position: 501-788
Cow position: chr28:19026780-19026496 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 207
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 212, 26

Conread position: 501-837
Cow position: chr28:22466248-22465919 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 211
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 187, 34

Conread position: 509-842
Cow position: chr28:24674111-24674431 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 528-839
Cow position: chr28:20147459-20147765 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 208
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 39, 110

Conread position: 532-842
Cow position: chr28:10173051-10172748 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 224
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 161, 207

Conread position: 535-838
Cow position: chr28:32365379-32365675 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 0

Conread position: 536-842
Cow position: chr28:4046560-4046858 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 64

Conread position: 551-840
Cow position: chr28:3820765-3820481 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 199
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 66, 49

Conread position: 564-842
Cow position: chr28:32300929-32300655 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 188

Conread position: 576-841
Cow position: chr28:5071704-5071450 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 188
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 156, 0

Conread position: 577-842
Cow position: chr28:26718777-26719040 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 196
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 158, 27

Conread position: 579-838
Cow position: chr28:17762111-17762365 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 0

Conread position: 587-842
Cow position: chr28:33697583-33697824 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 170
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 590-842
Cow position: chr28:18139989-18139745 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 187
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 30, 0

Conread position: 600-838
Cow position: chr28:20312745-20312981 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 166
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 129, 63

Conread position: 611-841
Cow position: chr28:1191766-1191543 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 170
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 50, 0

Conread position: 617-842
Cow position: chr28:20264868-20265087 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 161, 118

Conread position: 620-841
Cow position: chr28:9294531-9294749 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 63, 49

Conread position: 622-838
Cow position: chr28:23800990-23801206 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 162
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 62, 130

Conread position: 622-838
Cow position: chr28:31648578-31648784 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 203, 35

Conread position: 624-842
Cow position: chr28:10674206-10674416 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 164
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 76, 0

Conread position: 627-842
Cow position: chr28:6577161-6577370 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 121, 0

Conread position: 632-841
Cow position: chr28:34151028-34150830 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 162
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 103, 0

Conread position: 637-787
Cow position: chr28:22317002-22317146 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 47, 32

Conread position: 643-826
Cow position: chr28:32174173-32174350 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 653-820
Cow position: chr28:2090700-2090864 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 137
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 16, 0

Conread position: 653-842
Cow position: chr28:11690682-11690494 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 141, 19

Conread position: 658-842
Cow position: chr28:30994818-30994994 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 661-842
Cow position: chr28:31972214-31972041 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 166, 74

Conread position: 672-840
Cow position: chr28:31415913-31415749 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 98, 63

Conread position: 675-839
Cow position: chr28:28636361-28636520 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 68, 0

Conread position: 706-842
Cow position: chr28:3770090-3769959 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 740-841
Cow position: chr28:18463015-18462915 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 90, 0

Show alignments to all cow chromosomes.