Cow genome map
| Conread name: | Thy1-THY010085D12 |
| Conread position: | 328-657 |
| Cow position: | chr29:3106729-3107050 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 329-842 |
| Cow position: | chr29:649466-649972 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 16 |
| Conread position: | 329-842 |
| Cow position: | chr29:7664567-7664060 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 16 |
| Conread position: | 329-842 |
| Cow position: | chr29:32962738-32963244 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 16 |
| Conread position: | 330-663 |
| Cow position: | chr29:13044247-13043912 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 330-822 |
| Cow position: | chr29:13077131-13077639 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 15 |
| Conread position: | 330-841 |
| Cow position: | chr29:24211855-24212373 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 15 |
| Conread position: | 330-842 |
| Cow position: | chr29:4755807-4755318 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 330-842 |
| Cow position: | chr29:13635131-13634622 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 15 |
| Conread position: | 330-842 |
| Cow position: | chr29:38247551-38247041 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 15 |
| Conread position: | 331-656 |
| Cow position: | chr29:34737267-34736944 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 331-838 |
| Cow position: | chr29:39332390-39331876 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 334-838 |
| Cow position: | chr29:11588462-11588959 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 334-839 |
| Cow position: | chr29:29056396-29056884 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 11 |
| Conread position: | 334-840 |
| Cow position: | chr29:2589710-2589197 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 334-842 |
| Cow position: | chr29:133410-133894 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 334-842 |
| Cow position: | chr29:19761496-19761979 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 335-842 |
| Cow position: | chr29:26263061-26263559 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 10 |
| Conread position: | 344-745 |
| Cow position: | chr29:11786450-11786847 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 170 |
| Conread position: | 345-817 |
| Cow position: | chr29:13058157-13058620 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 345-842 |
| Cow position: | chr29:7724113-7724607 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 61 |
| Conread position: | 345-842 |
| Cow position: | chr29:40498428-40497943 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 480, 181 |
| Conread position: | 346-821 |
| Cow position: | chr29:40733026-40732558 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 171 |
| Conread position: | 347-698 |
| Cow position: | chr29:19398111-19398460 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 181 |
| Conread position: | 347-754 |
| Cow position: | chr29:5550220-5550629 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 183 |
| Conread position: | 347-839 |
| Cow position: | chr29:2694151-2694635 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 184 |
| Conread position: | 347-839 |
| Cow position: | chr29:32807810-32808298 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 182 |
| Conread position: | 347-842 |
| Cow position: | chr29:18072149-18072642 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 98 |
| Conread position: | 348-823 |
| Cow position: | chr29:22935498-22935969 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 274 |
| Conread position: | 348-842 |
| Cow position: | chr29:2367590-2367099 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 171 |
| Conread position: | 348-842 |
| Cow position: | chr29:21546296-21545797 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 351-823 |
| Cow position: | chr29:40338339-40337847 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 15 |
| Conread position: | 374-842 |
| Cow position: | chr29:23753962-23753504 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 381-821 |
| Cow position: | chr29:17135028-17135462 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 301 |
| Conread position: | 382-842 |
| Cow position: | chr29:17153738-17154189 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 54 |
| Conread position: | 383-840 |
| Cow position: | chr29:7960272-7959820 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 128 |
| Conread position: | 385-841 |
| Cow position: | chr29:13553400-13553848 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 440, 140 |
| Conread position: | 385-842 |
| Cow position: | chr29:40116814-40117275 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 132 |
| Conread position: | 389-841 |
| Cow position: | chr29:27858074-27858516 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 226 |
| Conread position: | 392-842 |
| Cow position: | chr29:32644177-32644619 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 398-842 |
| Cow position: | chr29:6150794-6150357 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 118 |
| Conread position: | 407-842 |
| Cow position: | chr29:15941372-15940934 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 95 |
| Conread position: | 417-842 |
| Cow position: | chr29:29138907-29138487 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 48 |
| Conread position: | 421-842 |
| Cow position: | chr29:29303606-29303191 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 28 |
| Conread position: | 428-839 |
| Cow position: | chr29:13107643-13108039 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 431-839 |
| Cow position: | chr29:19755746-19756149 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 98 |
| Conread position: | 434-822 |
| Cow position: | chr29:11972601-11972970 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 94 |
| Conread position: | 435-842 |
| Cow position: | chr29:23154527-23154930 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 31 |
| Conread position: | 441-840 |
| Cow position: | chr29:3539938-3539552 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 277 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 192, 44 |
| Conread position: | 442-840 |
| Cow position: | chr29:4201445-4201821 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 446-842 |
| Cow position: | chr29:35112744-35112367 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 449-838 |
| Cow position: | chr29:4218003-4218368 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 462-841 |
| Cow position: | chr29:39214281-39213914 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 462-842 |
| Cow position: | chr29:24952002-24952390 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 65 |
| Conread position: | 477-822 |
| Cow position: | chr29:35739149-35738820 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 241 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 65, 51 |
| Conread position: | 478-842 |
| Cow position: | chr29:8070120-8070472 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 255 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 170, 49 |
| Conread position: | 481-840 |
| Cow position: | chr29:13101496-13101843 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 503-839 |
| Cow position: | chr29:21443967-21443643 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 503-842 |
| Cow position: | chr29:40300590-40300263 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 538-823 |
| Cow position: | chr29:18022215-18021938 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 39 |
| Conread position: | 539-842 |
| Cow position: | chr29:9911568-9911866 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 164 |
| Conread position: | 543-841 |
| Cow position: | chr29:12898207-12898494 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 215 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 190, 214 |
| Conread position: | 545-840 |
| Cow position: | chr29:7799227-7799518 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 18, 162 |
| Conread position: | 548-842 |
| Cow position: | chr29:19428088-19428377 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 552-842 |
| Cow position: | chr29:3501811-3502098 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 57, 199 |
| Conread position: | 558-842 |
| Cow position: | chr29:13127674-13127406 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 558-842 |
| Cow position: | chr29:37719340-37719616 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 68 |
| Conread position: | 566-842 |
| Cow position: | chr29:10819232-10818957 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 69, 189 |
| Conread position: | 586-842 |
| Cow position: | chr29:17667952-17668210 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 15 |
| Conread position: | 588-842 |
| Cow position: | chr29:43500006-43499763 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 593-842 |
| Cow position: | chr29:5948329-5948083 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 39 |
| Conread position: | 597-842 |
| Cow position: | chr29:38933160-38932921 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 606-842 |
| Cow position: | chr29:12901622-12901400 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 73, 146 |
| Conread position: | 608-842 |
| Cow position: | chr29:18749101-18748877 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 75, 126 |
| Conread position: | 628-839 |
| Cow position: | chr29:4692315-4692112 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 640-842 |
| Cow position: | chr29:20539234-20539037 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 137, 95 |
| Conread position: | 643-841 |
| Cow position: | chr29:18963249-18963446 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 57, 39 |
| Conread position: | 656-842 |
| Cow position: | chr29:2136576-2136395 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 666-842 |
| Cow position: | chr29:34736914-34736740 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 130, 69 |
| Conread position: | 668-841 |
| Cow position: | chr29:6771521-6771688 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 677-832 |
| Cow position: | chr29:6218010-6217860 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 108, 18 |
| Conread position: | 682-839 |
| Cow position: | chr29:26415564-26415715 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 690-841 |
| Cow position: | chr29:26128474-26128329 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 82, 59 |
| Conread position: | 739-842 |
| Cow position: | chr29:26470650-26470547 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 85 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.