Cow genome map
| Conread name: | Thy1-THY010090H02 |
| Conread position: | 22-463 |
| Cow position: | chr1:49951445-49950994 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 311 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 41, 33 |
| Conread position: | 54-748 |
| Cow position: | chr1:67101989-67101326 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 31 |
| Conread position: | 54-801 |
| Cow position: | chr1:16848666-16849417 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 54 |
| Conread position: | 60-747 |
| Cow position: | chr1:74536532-74535848 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 428 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 9 |
| Conread position: | 62-517 |
| Cow position: | chr1:42422156-42422596 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 317 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 66, 40 |
| Conread position: | 62-539 |
| Cow position: | chr1:74881186-74880712 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 9 |
| Conread position: | 62-543 |
| Cow position: | chr1:50371893-50371401 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 37 |
| Conread position: | 62-544 |
| Cow position: | chr1:5364146-5364643 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 322 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 60, 302 |
| Conread position: | 62-567 |
| Cow position: | chr1:13271215-13270721 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 46 |
| Conread position: | 62-616 |
| Cow position: | chr1:69211555-69211000 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 40 |
| Conread position: | 71-369 |
| Cow position: | chr1:85528222-85527902 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 71-383 |
| Cow position: | chr1:3616720-3616388 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 72, 31 |
| Conread position: | 71-383 |
| Cow position: | chr1:18028088-18028402 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 71, 31 |
| Conread position: | 71-413 |
| Cow position: | chr1:37864537-37864194 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 97, 31 |
| Conread position: | 71-472 |
| Cow position: | chr1:17113281-17112874 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 151 |
| Conread position: | 71-555 |
| Cow position: | chr1:30301412-30301900 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 31 |
| Conread position: | 71-769 |
| Cow position: | chr1:27689447-27688759 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 426 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 72, 270 |
| Conread position: | 71-799 |
| Cow position: | chr1:69351331-69350590 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 465 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 103, 31 |
| Conread position: | 71-802 |
| Cow position: | chr1:7636453-7637167 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 31 |
| Conread position: | 72-454 |
| Cow position: | chr1:56450425-56450829 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 103, 28 |
| Conread position: | 73-803 |
| Cow position: | chr1:50592882-50593603 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 29 |
| Conread position: | 80-797 |
| Cow position: | chr1:48588087-48587373 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 23 |
| Conread position: | 86-798 |
| Cow position: | chr1:47162918-47163612 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 16 |
| Conread position: | 89-542 |
| Cow position: | chr1:40588998-40589452 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 291 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 91, 19 |
| Conread position: | 92-697 |
| Cow position: | chr1:73510371-73509776 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 392 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 81, 16 |
| Conread position: | 97-494 |
| Cow position: | chr1:56184820-56184429 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 266 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 81, 5 |
| Conread position: | 97-715 |
| Cow position: | chr1:23839519-23838894 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 301 |
| Conread position: | 97-730 |
| Cow position: | chr1:42821177-42821806 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 421 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 11, 200 |
| Conread position: | 102-478 |
| Cow position: | chr1:31814220-31814624 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 102-773 |
| Cow position: | chr1:39141343-39140664 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 51 |
| Conread position: | 102-799 |
| Cow position: | chr1:85295301-85296004 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 35 |
| Conread position: | 108-275 |
| Cow position: | chr1:73642131-73641965 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 98 |
| Conread position: | 111-482 |
| Cow position: | chr1:41974632-41974267 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 128, 60 |
| Conread position: | 131-562 |
| Cow position: | chr1:2998533-2998976 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 137-789 |
| Cow position: | chr1:56653090-56652445 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 67 |
| Conread position: | 160-312 |
| Cow position: | chr1:88305657-88305504 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 160-370 |
| Cow position: | chr1:14681739-14681529 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 81 |
| Conread position: | 160-517 |
| Cow position: | chr1:79421621-79421276 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 70, 49 |
| Conread position: | 160-538 |
| Cow position: | chr1:69865542-69865918 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 167 |
| Conread position: | 160-697 |
| Cow position: | chr1:21804852-21804293 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 527 |
| Conread position: | 161-438 |
| Cow position: | chr1:33580444-33580172 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 111, 47 |
| Conread position: | 161-700 |
| Cow position: | chr1:14571502-14570966 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 356 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 108, 78 |
| Conread position: | 164-548 |
| Cow position: | chr1:87519486-87519100 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 262 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 82, 232 |
| Conread position: | 164-799 |
| Cow position: | chr1:10888964-10888328 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 56 |
| Conread position: | 172-517 |
| Cow position: | chr1:74886172-74886521 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 181-512 |
| Cow position: | chr1:19758417-19758104 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 94, 30 |
| Conread position: | 194-517 |
| Cow position: | chr1:42771092-42770771 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 188 |
| Conread position: | 196-555 |
| Cow position: | chr1:41515765-41515396 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 10, 45 |
| Conread position: | 228-747 |
| Cow position: | chr1:19828636-19828132 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 81 |
| Conread position: | 232-587 |
| Cow position: | chr1:73933225-73933575 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 243-739 |
| Cow position: | chr1:76700386-76699888 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 326 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 37, 164 |
| Conread position: | 244-609 |
| Cow position: | chr1:60279891-60280258 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 149, 35 |
| Conread position: | 244-801 |
| Cow position: | chr1:5228187-5227635 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 356 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 52, 141 |
| Conread position: | 252-652 |
| Cow position: | chr1:18024453-18024050 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 272 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 23, 152 |
| Conread position: | 264-799 |
| Cow position: | chr1:73243868-73244386 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 265-562 |
| Cow position: | chr1:89112201-89112494 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 12, 117 |
| Conread position: | 265-612 |
| Cow position: | chr1:4375414-4375075 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 9, 69 |
| Conread position: | 275-554 |
| Cow position: | chr1:31352237-31351962 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 126, 104 |
| Conread position: | 280-799 |
| Cow position: | chr1:87473324-87472797 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 108 |
| Conread position: | 284-801 |
| Cow position: | chr1:33172489-33171986 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 10 |
| Conread position: | 296-738 |
| Cow position: | chr1:70864663-70865097 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 79 |
| Conread position: | 298-572 |
| Cow position: | chr1:13579359-13579091 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 102, 82 |
| Conread position: | 302-693 |
| Cow position: | chr1:34314833-34314457 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 98, 17 |
| Conread position: | 302-801 |
| Cow position: | chr1:82300779-82301256 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 139, 82 |
| Conread position: | 308-622 |
| Cow position: | chr1:98535045-98535353 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 69 |
| Conread position: | 318-687 |
| Cow position: | chr1:52038760-52039120 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 106, 64 |
| Conread position: | 320-526 |
| Cow position: | chr1:1163991-1164199 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 63 |
| Conread position: | 320-572 |
| Cow position: | chr1:21429062-21429310 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 80, 56 |
| Conread position: | 321-757 |
| Cow position: | chr1:20078724-20078291 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 79, 87 |
Show alignments to all cow chromosomes.