Cow genome map
Conread name: | Thy1-THY010090H02 |
Conread position: | 62-621 |
Cow position: | chr11:40502638-40502079 (view UCSC Genome Browser custom track) |
Alignm length: | 579 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 114, 40 |
Conread position: | 62-631 |
Cow position: | chr11:57595504-57596083 (view UCSC Genome Browser custom track) |
Alignm length: | 587 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 109, 40 |
Conread position: | 62-799 |
Cow position: | chr11:43845528-43844790 (view UCSC Genome Browser custom track) |
Alignm length: | 755 |
Alignm identity: | 516 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 72, 39 |
Conread position: | 71-312 |
Cow position: | chr11:50557003-50556758 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 178 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 97, 16 |
Conread position: | 71-539 |
Cow position: | chr11:71302815-71303294 (view UCSC Genome Browser custom track) |
Alignm length: | 491 |
Alignm identity: | 336 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 31 |
Conread position: | 71-791 |
Cow position: | chr11:16685231-16685935 (view UCSC Genome Browser custom track) |
Alignm length: | 740 |
Alignm identity: | 505 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 148 |
Conread position: | 71-802 |
Cow position: | chr11:65682025-65682721 (view UCSC Genome Browser custom track) |
Alignm length: | 750 |
Alignm identity: | 501 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 31 |
Conread position: | 73-465 |
Cow position: | chr11:37438776-37439174 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 29 |
Conread position: | 78-523 |
Cow position: | chr11:47087256-47086833 (view UCSC Genome Browser custom track) |
Alignm length: | 452 |
Alignm identity: | 293 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 94, 18 |
Conread position: | 84-509 |
Cow position: | chr11:76960313-76960738 (view UCSC Genome Browser custom track) |
Alignm length: | 442 |
Alignm identity: | 282 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 93, 18 |
Conread position: | 87-492 |
Cow position: | chr11:46721358-46720958 (view UCSC Genome Browser custom track) |
Alignm length: | 417 |
Alignm identity: | 279 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 55, 15 |
Conread position: | 89-732 |
Cow position: | chr11:2721395-2720762 (view UCSC Genome Browser custom track) |
Alignm length: | 656 |
Alignm identity: | 415 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 141, 13 |
Conread position: | 89-732 |
Cow position: | chr11:4246310-4246947 (view UCSC Genome Browser custom track) |
Alignm length: | 656 |
Alignm identity: | 413 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 141, 13 |
Conread position: | 91-572 |
Cow position: | chr11:74928661-74929159 (view UCSC Genome Browser custom track) |
Alignm length: | 506 |
Alignm identity: | 316 |
Alignm E-value: | 4e-26 |
Alignm gaps (pig, cow): | 113, 11 |
Conread position: | 97-531 |
Cow position: | chr11:52740276-52739851 (view UCSC Genome Browser custom track) |
Alignm length: | 445 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 40 |
Conread position: | 97-547 |
Cow position: | chr11:44528925-44529376 (view UCSC Genome Browser custom track) |
Alignm length: | 472 |
Alignm identity: | 312 |
Alignm E-value: | 3e-33 |
Alignm gaps (pig, cow): | 12, 153 |
Conread position: | 102-760 |
Cow position: | chr11:62873830-62873189 (view UCSC Genome Browser custom track) |
Alignm length: | 669 |
Alignm identity: | 430 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 89, 69 |
Conread position: | 102-773 |
Cow position: | chr11:53855405-53856081 (view UCSC Genome Browser custom track) |
Alignm length: | 697 |
Alignm identity: | 436 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 68, 213 |
Conread position: | 108-543 |
Cow position: | chr11:46574738-46575179 (view UCSC Genome Browser custom track) |
Alignm length: | 455 |
Alignm identity: | 297 |
Alignm E-value: | 7e-32 |
Alignm gaps (pig, cow): | 43, 79 |
Conread position: | 131-800 |
Cow position: | chr11:64478262-64477607 (view UCSC Genome Browser custom track) |
Alignm length: | 682 |
Alignm identity: | 484 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 56 |
Conread position: | 152-798 |
Cow position: | chr11:11052262-11051623 (view UCSC Genome Browser custom track) |
Alignm length: | 661 |
Alignm identity: | 403 |
Alignm E-value: | 7e-32 |
Alignm gaps (pig, cow): | 116, 9 |
Conread position: | 154-773 |
Cow position: | chr11:3263756-3264373 (view UCSC Genome Browser custom track) |
Alignm length: | 634 |
Alignm identity: | 400 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 74, 60 |
Conread position: | 160-660 |
Cow position: | chr11:9715199-9714711 (view UCSC Genome Browser custom track) |
Alignm length: | 509 |
Alignm identity: | 360 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 141, 227 |
Conread position: | 161-369 |
Cow position: | chr11:85403738-85403950 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 159 |
Alignm E-value: | 6e-30 |
Alignm gaps (pig, cow): | 91, 167 |
Conread position: | 161-688 |
Cow position: | chr11:19795113-19795623 (view UCSC Genome Browser custom track) |
Alignm length: | 537 |
Alignm identity: | 360 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 49 |
Conread position: | 161-797 |
Cow position: | chr11:5261244-5260603 (view UCSC Genome Browser custom track) |
Alignm length: | 655 |
Alignm identity: | 446 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 225 |
Conread position: | 164-429 |
Cow position: | chr11:10809318-10809048 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 191 |
Alignm E-value: | 7e-31 |
Alignm gaps (pig, cow): | 43, 17 |
Conread position: | 164-507 |
Cow position: | chr11:70195159-70194819 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 137, 55 |
Conread position: | 164-799 |
Cow position: | chr11:35231765-35232371 (view UCSC Genome Browser custom track) |
Alignm length: | 641 |
Alignm identity: | 459 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 120, 63 |
Conread position: | 165-695 |
Cow position: | chr11:75360896-75360366 (view UCSC Genome Browser custom track) |
Alignm length: | 544 |
Alignm identity: | 345 |
Alignm E-value: | 5e-39 |
Alignm gaps (pig, cow): | 109, 174 |
Conread position: | 166-555 |
Cow position: | chr11:84741200-84741578 (view UCSC Genome Browser custom track) |
Alignm length: | 393 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 218 |
Conread position: | 166-565 |
Cow position: | chr11:15653428-15653824 (view UCSC Genome Browser custom track) |
Alignm length: | 408 |
Alignm identity: | 264 |
Alignm E-value: | 7e-32 |
Alignm gaps (pig, cow): | 40, 99 |
Conread position: | 166-799 |
Cow position: | chr11:17866894-17867516 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 435 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 101, 210 |
Conread position: | 167-772 |
Cow position: | chr11:53307953-53307361 (view UCSC Genome Browser custom track) |
Alignm length: | 618 |
Alignm identity: | 388 |
Alignm E-value: | 3e-35 |
Alignm gaps (pig, cow): | 118, 39 |
Conread position: | 177-799 |
Cow position: | chr11:46032795-46032170 (view UCSC Genome Browser custom track) |
Alignm length: | 642 |
Alignm identity: | 395 |
Alignm E-value: | 8e-33 |
Alignm gaps (pig, cow): | 104, 213 |
Conread position: | 178-802 |
Cow position: | chr11:15942358-15941764 (view UCSC Genome Browser custom track) |
Alignm length: | 631 |
Alignm identity: | 388 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 114, 50 |
Conread position: | 182-713 |
Cow position: | chr11:19490500-19491022 (view UCSC Genome Browser custom track) |
Alignm length: | 547 |
Alignm identity: | 341 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 6, 74 |
Conread position: | 183-478 |
Cow position: | chr11:6683255-6683544 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 210 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 92, 55 |
Conread position: | 186-500 |
Cow position: | chr11:4865390-4865082 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 207 |
Alignm E-value: | 8e-23 |
Alignm gaps (pig, cow): | 93, 45 |
Conread position: | 195-799 |
Cow position: | chr11:35508844-35509444 (view UCSC Genome Browser custom track) |
Alignm length: | 620 |
Alignm identity: | 415 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 90 |
Conread position: | 205-496 |
Cow position: | chr11:67435680-67435407 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 205 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 195, 87 |
Conread position: | 215-689 |
Cow position: | chr11:18437367-18436903 (view UCSC Genome Browser custom track) |
Alignm length: | 484 |
Alignm identity: | 310 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 21, 175 |
Conread position: | 226-419 |
Cow position: | chr11:36452902-36452708 (view UCSC Genome Browser custom track) |
Alignm length: | 201 |
Alignm identity: | 143 |
Alignm E-value: | 8e-22 |
Alignm gaps (pig, cow): | 49, 162 |
Conread position: | 228-791 |
Cow position: | chr11:24140235-24140775 (view UCSC Genome Browser custom track) |
Alignm length: | 575 |
Alignm identity: | 361 |
Alignm E-value: | 4e-27 |
Alignm gaps (pig, cow): | 53, 34 |
Conread position: | 231-786 |
Cow position: | chr11:15674076-15673530 (view UCSC Genome Browser custom track) |
Alignm length: | 569 |
Alignm identity: | 369 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 44, 158 |
Conread position: | 233-758 |
Cow position: | chr11:70602271-70601748 (view UCSC Genome Browser custom track) |
Alignm length: | 537 |
Alignm identity: | 350 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 7 |
Conread position: | 240-607 |
Cow position: | chr11:4453323-4452968 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 243 |
Alignm E-value: | 9e-24 |
Alignm gaps (pig, cow): | 26, 138 |
Conread position: | 265-728 |
Cow position: | chr11:31236360-31235897 (view UCSC Genome Browser custom track) |
Alignm length: | 475 |
Alignm identity: | 309 |
Alignm E-value: | 6.99949e-42 |
Alignm gaps (pig, cow): | 12, 139 |
Conread position: | 266-462 |
Cow position: | chr11:12544235-12544429 (view UCSC Genome Browser custom track) |
Alignm length: | 200 |
Alignm identity: | 141 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 29, 45 |
Conread position: | 267-572 |
Cow position: | chr11:49037367-49037065 (view UCSC Genome Browser custom track) |
Alignm length: | 319 |
Alignm identity: | 217 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 35, 115 |
Conread position: | 275-715 |
Cow position: | chr11:16654267-16653854 (view UCSC Genome Browser custom track) |
Alignm length: | 446 |
Alignm identity: | 284 |
Alignm E-value: | 8e-22 |
Alignm gaps (pig, cow): | 26, 40 |
Conread position: | 282-792 |
Cow position: | chr11:21519723-21520236 (view UCSC Genome Browser custom track) |
Alignm length: | 529 |
Alignm identity: | 339 |
Alignm E-value: | 5e-39 |
Alignm gaps (pig, cow): | 125, 12 |
Conread position: | 296-581 |
Cow position: | chr11:4206252-4206546 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 192 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 97, 211 |
Conread position: | 300-572 |
Cow position: | chr11:45839807-45839543 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 203 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 100, 82 |
Conread position: | 300-775 |
Cow position: | chr11:79995666-79995203 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 314 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 45, 35 |
Conread position: | 302-783 |
Cow position: | chr11:52134445-52134005 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 0 |
Conread position: | 320-756 |
Cow position: | chr11:9388441-9388869 (view UCSC Genome Browser custom track) |
Alignm length: | 440 |
Alignm identity: | 277 |
Alignm E-value: | 3e-34 |
Alignm gaps (pig, cow): | 89, 65 |
Conread position: | 321-758 |
Cow position: | chr11:9971803-9971370 (view UCSC Genome Browser custom track) |
Alignm length: | 444 |
Alignm identity: | 287 |
Alignm E-value: | 6e-40 |
Alignm gaps (pig, cow): | 93, 58 |
Conread position: | 322-773 |
Cow position: | chr11:58816702-58817138 (view UCSC Genome Browser custom track) |
Alignm length: | 456 |
Alignm identity: | 299 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 114, 60 |
Show alignments to all cow chromosomes.