Cow genome map
| Conread name: | Thy1-THY010090H02 |
| Conread position: | 24-707 |
| Cow position: | chr16:23892903-23892246 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 189 |
| Conread position: | 61-441 |
| Cow position: | chr16:7648486-7648854 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 214, 50 |
| Conread position: | 62-676 |
| Cow position: | chr16:23465693-23466310 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 40 |
| Conread position: | 66-395 |
| Cow position: | chr16:6153684-6153337 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 70, 21 |
| Conread position: | 71-539 |
| Cow position: | chr16:45801189-45801649 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 71-800 |
| Cow position: | chr16:29738622-29737888 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 31 |
| Conread position: | 71-803 |
| Cow position: | chr16:31619725-31619005 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 31 |
| Conread position: | 73-605 |
| Cow position: | chr16:24603632-24603086 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 359 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 95, 58 |
| Conread position: | 74-526 |
| Cow position: | chr16:52473506-52473057 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 44 |
| Conread position: | 76-270 |
| Cow position: | chr16:50035624-50035823 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 90, 32 |
| Conread position: | 76-407 |
| Cow position: | chr16:34310186-34310509 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 293, 116 |
| Conread position: | 87-757 |
| Cow position: | chr16:32777393-32776724 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 428 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 76, 15 |
| Conread position: | 102-795 |
| Cow position: | chr16:34019631-34018924 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 549 |
| Conread position: | 102-802 |
| Cow position: | chr16:15046211-15045521 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 57 |
| Conread position: | 103-569 |
| Cow position: | chr16:29864847-29864384 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 301 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 133, 96 |
| Conread position: | 137-770 |
| Cow position: | chr16:22388329-22387704 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 419 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 66, 35 |
| Conread position: | 160-551 |
| Cow position: | chr16:53678659-53678282 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 254 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 117, 99 |
| Conread position: | 160-802 |
| Cow position: | chr16:20124425-20125059 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 48 |
| Conread position: | 161-555 |
| Cow position: | chr16:19158812-19158444 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 114, 28 |
| Conread position: | 164-380 |
| Cow position: | chr16:259306-259085 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 104, 126 |
| Conread position: | 164-798 |
| Cow position: | chr16:30696014-30695374 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 69 |
| Conread position: | 166-800 |
| Cow position: | chr16:4019100-4018478 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 199 |
| Conread position: | 189-586 |
| Cow position: | chr16:2202244-2202653 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 79, 139 |
| Conread position: | 195-539 |
| Cow position: | chr16:52255537-52255202 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 106, 30 |
| Conread position: | 196-413 |
| Cow position: | chr16:635628-635410 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 144 |
| Conread position: | 210-538 |
| Cow position: | chr16:32839153-32839480 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 228 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 64, 158 |
| Conread position: | 233-537 |
| Cow position: | chr16:42074286-42073975 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 148 |
| Conread position: | 241-726 |
| Cow position: | chr16:55154446-55154929 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 324 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 17 |
| Conread position: | 246-729 |
| Cow position: | chr16:51087408-51087890 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 145 |
| Conread position: | 252-495 |
| Cow position: | chr16:14745907-14745667 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 46, 23 |
| Conread position: | 252-759 |
| Cow position: | chr16:15187695-15188194 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 333 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 25, 133 |
| Conread position: | 262-802 |
| Cow position: | chr16:52309018-52308495 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 38 |
| Conread position: | 273-615 |
| Cow position: | chr16:684954-684611 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 29, 128 |
| Conread position: | 283-681 |
| Cow position: | chr16:49170213-49169829 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 59, 69 |
| Conread position: | 296-761 |
| Cow position: | chr16:39615903-39616355 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 63, 56 |
| Conread position: | 300-707 |
| Cow position: | chr16:52165739-52165340 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 82 |
| Conread position: | 302-759 |
| Cow position: | chr16:43894574-43894124 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 74 |
| Conread position: | 309-497 |
| Cow position: | chr16:48415052-48415237 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 145, 79 |
| Conread position: | 319-634 |
| Cow position: | chr16:1223958-1223647 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 81, 63 |
| Conread position: | 321-761 |
| Cow position: | chr16:25893214-25893641 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 101, 64 |
Show alignments to all cow chromosomes.