Cow genome map
| Conread name: | Thy1-THY010090H02 |
| Conread position: | 54-687 |
| Cow position: | chr2:20554715-20554076 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 416 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 117, 48 |
| Conread position: | 61-715 |
| Cow position: | chr2:826280-825625 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 27 |
| Conread position: | 61-762 |
| Cow position: | chr2:39692646-39693360 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 444 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 116, 41 |
| Conread position: | 62-797 |
| Cow position: | chr2:21475102-21474379 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 40 |
| Conread position: | 62-797 |
| Cow position: | chr2:55474580-55473844 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 40 |
| Conread position: | 62-802 |
| Cow position: | chr2:5732781-5733498 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 39 |
| Conread position: | 70-802 |
| Cow position: | chr2:64203814-64204568 (view UCSC Genome Browser custom track) |
| Alignm length: | 783 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 360 |
| Conread position: | 71-333 |
| Cow position: | chr2:36506907-36506634 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 97, 31 |
| Conread position: | 71-375 |
| Cow position: | chr2:26887879-26888195 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 24, 159 |
| Conread position: | 71-485 |
| Cow position: | chr2:58009160-58008737 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 301 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 67, 18 |
| Conread position: | 71-773 |
| Cow position: | chr2:40374135-40373446 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 37 |
| Conread position: | 71-799 |
| Cow position: | chr2:84490174-84489471 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 16 |
| Conread position: | 71-802 |
| Cow position: | chr2:83248985-83248240 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 267 |
| Conread position: | 72-428 |
| Cow position: | chr2:14126904-14126542 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 130, 36 |
| Conread position: | 73-799 |
| Cow position: | chr2:54054889-54055618 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 38 |
| Conread position: | 77-541 |
| Cow position: | chr2:42656387-42656853 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 305 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 99, 25 |
| Conread position: | 81-686 |
| Cow position: | chr2:11961725-11962342 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 392 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 125, 11 |
| Conread position: | 87-756 |
| Cow position: | chr2:16414805-16415499 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 442 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 91, 15 |
| Conread position: | 102-456 |
| Cow position: | chr2:481656-482002 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 173, 271 |
| Conread position: | 102-761 |
| Cow position: | chr2:76985772-76985100 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 86 |
| Conread position: | 130-532 |
| Cow position: | chr2:24150278-24150661 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 275 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 270, 28 |
| Conread position: | 131-496 |
| Cow position: | chr2:1661189-1661551 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 253 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 11, 75 |
| Conread position: | 131-603 |
| Cow position: | chr2:5478339-5477883 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 318 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 41, 206 |
| Conread position: | 137-550 |
| Cow position: | chr2:76815123-76815513 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 282 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 18, 62 |
| Conread position: | 152-383 |
| Cow position: | chr2:69859260-69859497 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 69, 9 |
| Conread position: | 153-500 |
| Cow position: | chr2:84757629-84757975 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 188 |
| Conread position: | 153-548 |
| Cow position: | chr2:871484-871087 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 97, 138 |
| Conread position: | 160-509 |
| Cow position: | chr2:77066082-77066426 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 106, 229 |
| Conread position: | 160-537 |
| Cow position: | chr2:26510991-26511366 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 111, 54 |
| Conread position: | 160-601 |
| Cow position: | chr2:19582789-19583228 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 301 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 59, 6 |
| Conread position: | 160-732 |
| Cow position: | chr2:43360426-43359862 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 80 |
| Conread position: | 161-802 |
| Cow position: | chr2:56714513-56713877 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 53 |
| Conread position: | 167-572 |
| Cow position: | chr2:33398664-33398270 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 101, 133 |
| Conread position: | 178-531 |
| Cow position: | chr2:16562836-16563174 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 222, 36 |
| Conread position: | 181-622 |
| Cow position: | chr2:43679218-43679653 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 294 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 86, 100 |
| Conread position: | 182-754 |
| Cow position: | chr2:56870354-56869773 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 375 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 117, 224 |
| Conread position: | 185-467 |
| Cow position: | chr2:15690482-15690760 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 21, 91 |
| Conread position: | 189-689 |
| Cow position: | chr2:76811125-76811626 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 315 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 76, 87 |
| Conread position: | 194-799 |
| Cow position: | chr2:26113978-26113373 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 29 |
| Conread position: | 196-800 |
| Cow position: | chr2:24153899-24154497 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 192 |
| Conread position: | 202-761 |
| Cow position: | chr2:49181482-49180930 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 362 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 95, 65 |
| Conread position: | 219-799 |
| Cow position: | chr2:80439568-80440146 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 167 |
| Conread position: | 228-531 |
| Cow position: | chr2:80120327-80120032 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 45, 159 |
| Conread position: | 228-733 |
| Cow position: | chr2:17941211-17940696 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 335 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 40, 158 |
| Conread position: | 233-756 |
| Cow position: | chr2:71726778-71727286 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 348 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 37, 145 |
| Conread position: | 235-799 |
| Cow position: | chr2:64222341-64221781 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 362 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 34, 150 |
| Conread position: | 240-495 |
| Cow position: | chr2:14825359-14825608 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 37, 103 |
| Conread position: | 242-799 |
| Cow position: | chr2:10881449-10881997 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 182 |
| Conread position: | 243-572 |
| Cow position: | chr2:7905800-7906117 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 32, 91 |
| Conread position: | 246-747 |
| Cow position: | chr2:31124873-31125379 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 323 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 31, 265 |
| Conread position: | 247-773 |
| Cow position: | chr2:76181301-76180789 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 16 |
| Conread position: | 252-759 |
| Cow position: | chr2:8121563-8122063 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 129 |
| Conread position: | 253-760 |
| Cow position: | chr2:68191483-68190999 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 327 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 46, 90 |
| Conread position: | 258-696 |
| Cow position: | chr2:5901868-5901444 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 289 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 272-509 |
| Cow position: | chr2:1657179-1657416 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 42, 112 |
| Conread position: | 275-797 |
| Cow position: | chr2:66067095-66067599 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 363 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 25, 112 |
| Conread position: | 296-697 |
| Cow position: | chr2:77672367-77671971 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 283 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 211, 89 |
| Conread position: | 300-726 |
| Cow position: | chr2:39642238-39642645 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 82 |
| Conread position: | 302-758 |
| Cow position: | chr2:24876283-24875832 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 74 |
| Conread position: | 302-797 |
| Cow position: | chr2:14405405-14405886 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 65 |
| Conread position: | 320-802 |
| Cow position: | chr2:24055272-24055762 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 55 |
| Conread position: | 322-762 |
| Cow position: | chr2:51835779-51835340 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 294 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 76, 60 |
Show alignments to all cow chromosomes.