Cow genome map
| Conread name: | Thy1-THY010090H02 |
| Conread position: | 61-729 |
| Cow position: | chr3:57456001-57456670 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 428 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 18, 27 |
| Conread position: | 62-791 |
| Cow position: | chr3:14050607-14051314 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 45 |
| Conread position: | 62-803 |
| Cow position: | chr3:43482832-43483580 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 40 |
| Conread position: | 63-755 |
| Cow position: | chr3:22512358-22513038 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 39 |
| Conread position: | 71-353 |
| Cow position: | chr3:56963378-56963087 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 81, 31 |
| Conread position: | 71-380 |
| Cow position: | chr3:62736620-62736308 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 95, 11 |
| Conread position: | 71-383 |
| Cow position: | chr3:46851893-46852220 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 106, 31 |
| Conread position: | 71-417 |
| Cow position: | chr3:7354635-7354984 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 247 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 72, 37 |
| Conread position: | 71-472 |
| Cow position: | chr3:54680789-54680387 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 276 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 97, 31 |
| Conread position: | 71-536 |
| Cow position: | chr3:48995818-48996280 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 31 |
| Conread position: | 71-611 |
| Cow position: | chr3:65960939-65961486 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 33 |
| Conread position: | 71-720 |
| Cow position: | chr3:57660573-57661231 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 31 |
| Conread position: | 73-780 |
| Cow position: | chr3:56699591-56698865 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 16 |
| Conread position: | 76-796 |
| Cow position: | chr3:30366902-30366168 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 26 |
| Conread position: | 78-559 |
| Cow position: | chr3:74874814-74874332 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 301 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 131, 181 |
| Conread position: | 82-798 |
| Cow position: | chr3:58444307-58443588 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 26 |
| Conread position: | 84-772 |
| Cow position: | chr3:16716760-16716083 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 14 |
| Conread position: | 87-761 |
| Cow position: | chr3:47691059-47691712 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 427 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 165, 21 |
| Conread position: | 96-350 |
| Cow position: | chr3:58103670-58103932 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 70, 6 |
| Conread position: | 102-729 |
| Cow position: | chr3:56696930-56697560 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 93 |
| Conread position: | 108-738 |
| Cow position: | chr3:72863957-72863318 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 407 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 42, 279 |
| Conread position: | 130-546 |
| Cow position: | chr3:51458022-51458427 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 21 |
| Conread position: | 131-442 |
| Cow position: | chr3:23880053-23879753 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 21, 52 |
| Conread position: | 131-539 |
| Cow position: | chr3:23012328-23012736 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 34 |
| Conread position: | 137-380 |
| Cow position: | chr3:46084857-46085110 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 41, 65 |
| Conread position: | 159-762 |
| Cow position: | chr3:4080847-4080273 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 32 |
| Conread position: | 160-793 |
| Cow position: | chr3:47696960-47697595 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 414 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 112, 79 |
| Conread position: | 161-500 |
| Cow position: | chr3:31523855-31524185 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 107, 58 |
| Conread position: | 161-797 |
| Cow position: | chr3:37348996-37348381 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 80 |
| Conread position: | 166-505 |
| Cow position: | chr3:58064989-58064654 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 95 |
| Conread position: | 196-761 |
| Cow position: | chr3:71235719-71235197 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 10 |
| Conread position: | 205-799 |
| Cow position: | chr3:56494480-56493874 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 391 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 6, 178 |
| Conread position: | 210-570 |
| Cow position: | chr3:8586216-8585851 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 58, 194 |
| Conread position: | 212-776 |
| Cow position: | chr3:16332628-16333181 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 365 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 92, 16 |
| Conread position: | 217-792 |
| Cow position: | chr3:199923-200491 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 125 |
| Conread position: | 224-467 |
| Cow position: | chr3:33022491-33022742 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 22, 163 |
| Conread position: | 228-801 |
| Cow position: | chr3:9289827-9290375 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 372 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 46, 154 |
| Conread position: | 234-504 |
| Cow position: | chr3:76840174-76840437 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 35, 12 |
| Conread position: | 244-799 |
| Cow position: | chr3:76354689-76355242 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 364 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 54, 135 |
| Conread position: | 258-760 |
| Cow position: | chr3:2904202-2903712 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 323 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 22, 78 |
| Conread position: | 267-755 |
| Cow position: | chr3:33469405-33468919 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 47, 109 |
| Conread position: | 296-658 |
| Cow position: | chr3:53047497-53047145 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 186, 93 |
| Conread position: | 296-758 |
| Cow position: | chr3:23944259-23944699 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 78 |
| Conread position: | 300-799 |
| Cow position: | chr3:66134529-66134043 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 71 |
| Conread position: | 301-540 |
| Cow position: | chr3:80582156-80582387 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 177, 81 |
| Conread position: | 302-559 |
| Cow position: | chr3:40004210-40003956 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 177, 77 |
| Conread position: | 302-715 |
| Cow position: | chr3:50921338-50921735 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 106, 73 |
| Conread position: | 302-759 |
| Cow position: | chr3:66623487-66623938 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 74 |
| Conread position: | 302-800 |
| Cow position: | chr3:57531433-57531912 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 335 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 47, 60 |
| Conread position: | 310-548 |
| Cow position: | chr3:54959041-54959275 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 90, 69 |
| Conread position: | 310-772 |
| Cow position: | chr3:62611068-62611509 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 305 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 9, 73 |
| Conread position: | 320-758 |
| Cow position: | chr3:4031061-4031499 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 183 |
| Conread position: | 320-798 |
| Cow position: | chr3:40231075-40231551 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 312 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 93, 76 |
Show alignments to all cow chromosomes.