Cow genome map
| Conread name: | Thy1-THY010090H02 |
| Conread position: | 59-776 |
| Cow position: | chr5:48131351-48132039 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 10 |
| Conread position: | 61-635 |
| Cow position: | chr5:13258550-13259106 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 358 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 107, 19 |
| Conread position: | 62-551 |
| Cow position: | chr5:53944777-53945261 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 325 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 165, 34 |
| Conread position: | 62-558 |
| Cow position: | chr5:2238696-2238213 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 333 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 213, 40 |
| Conread position: | 62-581 |
| Cow position: | chr5:72540891-72541390 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 332 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 147, 15 |
| Conread position: | 70-803 |
| Cow position: | chr5:49154499-49153776 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 38 |
| Conread position: | 71-342 |
| Cow position: | chr5:51947559-51947849 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 86, 31 |
| Conread position: | 71-362 |
| Cow position: | chr5:56961515-56961823 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 97, 31 |
| Conread position: | 71-435 |
| Cow position: | chr5:51942606-51942982 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 275 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 86, 31 |
| Conread position: | 71-509 |
| Cow position: | chr5:42233327-42232885 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 31 |
| Conread position: | 71-517 |
| Cow position: | chr5:4437353-4437800 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 31 |
| Conread position: | 71-718 |
| Cow position: | chr5:12234655-12235307 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 31 |
| Conread position: | 71-774 |
| Cow position: | chr5:76050402-76049725 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 31 |
| Conread position: | 71-802 |
| Cow position: | chr5:39467853-39468589 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 31 |
| Conread position: | 75-799 |
| Cow position: | chr5:49070841-49070125 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 27 |
| Conread position: | 82-766 |
| Cow position: | chr5:51069175-51069846 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 20 |
| Conread position: | 84-555 |
| Cow position: | chr5:34285505-34285035 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 312 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 59, 18 |
| Conread position: | 89-538 |
| Cow position: | chr5:54397534-54397086 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 13 |
| Conread position: | 91-508 |
| Cow position: | chr5:56657735-56657302 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 280 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 80, 11 |
| Conread position: | 94-495 |
| Cow position: | chr5:53149289-53148876 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 275 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 57, 199 |
| Conread position: | 102-660 |
| Cow position: | chr5:41738658-41739201 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 360 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 47, 85 |
| Conread position: | 131-725 |
| Cow position: | chr5:49816563-49817143 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 174 |
| Conread position: | 137-440 |
| Cow position: | chr5:68485432-68485729 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 15, 42 |
| Conread position: | 137-502 |
| Cow position: | chr5:67622917-67623274 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 266 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 137, 29 |
| Conread position: | 137-770 |
| Cow position: | chr5:54169806-54170434 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 252 |
| Conread position: | 148-633 |
| Cow position: | chr5:26186754-26186269 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 303 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 29, 5 |
| Conread position: | 153-733 |
| Cow position: | chr5:820416-820969 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 77 |
| Conread position: | 153-795 |
| Cow position: | chr5:28037144-28037772 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 402 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 115, 234 |
| Conread position: | 154-771 |
| Cow position: | chr5:29661349-29660723 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 391 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 235, 25 |
| Conread position: | 160-539 |
| Cow position: | chr5:24240166-24240529 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 131, 101 |
| Conread position: | 160-696 |
| Cow position: | chr5:51075062-51074542 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 348 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 142, 73 |
| Conread position: | 160-799 |
| Cow position: | chr5:40708567-40709205 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 230 |
| Conread position: | 160-802 |
| Cow position: | chr5:37715564-37714919 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 11 |
| Conread position: | 161-342 |
| Cow position: | chr5:74283676-74283495 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 110, 139 |
| Conread position: | 161-542 |
| Cow position: | chr5:26402753-26402381 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 106, 61 |
| Conread position: | 164-761 |
| Cow position: | chr5:50063606-50064194 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 373 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 15, 57 |
| Conread position: | 164-802 |
| Cow position: | chr5:67423985-67423349 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 50 |
| Conread position: | 168-773 |
| Cow position: | chr5:50201930-50201343 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 370 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 112, 139 |
| Conread position: | 187-572 |
| Cow position: | chr5:26058205-26058589 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 76, 64 |
| Conread position: | 190-548 |
| Cow position: | chr5:75465307-75465677 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 81, 213 |
| Conread position: | 194-802 |
| Cow position: | chr5:2481218-2480624 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 162 |
| Conread position: | 202-797 |
| Cow position: | chr5:50990411-50991019 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 187 |
| Conread position: | 228-538 |
| Cow position: | chr5:4165758-4166063 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 41, 152 |
| Conread position: | 228-759 |
| Cow position: | chr5:54337028-54337556 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 154 |
| Conread position: | 235-552 |
| Cow position: | chr5:60490990-60490678 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 79, 106 |
| Conread position: | 237-802 |
| Cow position: | chr5:5308620-5309152 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 12 |
| Conread position: | 239-760 |
| Cow position: | chr5:31217230-31217745 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 349 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 251-791 |
| Cow position: | chr5:50189095-50189622 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 360 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 24, 140 |
| Conread position: | 252-738 |
| Cow position: | chr5:44709222-44708734 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 130 |
| Conread position: | 254-697 |
| Cow position: | chr5:74002528-74002953 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 293 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 22, 114 |
| Conread position: | 267-570 |
| Cow position: | chr5:38379158-38379456 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 114 |
| Conread position: | 267-650 |
| Cow position: | chr5:52041318-52040942 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 212, 118 |
| Conread position: | 267-760 |
| Cow position: | chr5:70771317-70771787 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 313 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 34, 119 |
| Conread position: | 273-673 |
| Cow position: | chr5:51070356-51070754 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 272 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 29, 117 |
| Conread position: | 275-677 |
| Cow position: | chr5:73254041-73253648 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 111 |
| Conread position: | 293-715 |
| Cow position: | chr5:27344101-27343677 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 186, 210 |
| Conread position: | 293-715 |
| Cow position: | chr5:27346412-27346836 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 186, 210 |
| Conread position: | 294-758 |
| Cow position: | chr5:7808697-7808227 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 302 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 15, 106 |
| Conread position: | 296-726 |
| Cow position: | chr5:54721852-54722274 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 150, 89 |
| Conread position: | 296-760 |
| Cow position: | chr5:35207442-35207895 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 300 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 186, 89 |
| Conread position: | 296-760 |
| Cow position: | chr5:45705211-45705665 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 304 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 183, 89 |
| Conread position: | 302-799 |
| Cow position: | chr5:29200343-29199865 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 41 |
| Conread position: | 302-799 |
| Cow position: | chr5:32614842-32614360 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 323 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 98, 80 |
| Conread position: | 305-758 |
| Cow position: | chr5:33472320-33471881 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 294 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 8, 92 |
| Conread position: | 308-744 |
| Cow position: | chr5:38158580-38159004 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 70 |
| Conread position: | 318-716 |
| Cow position: | chr5:28375277-28374889 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 137, 67 |
Show alignments to all cow chromosomes.