Cow genome map
| Conread name: | Thy1-THY010090H02 |
| Conread position: | 62-517 |
| Cow position: | chr6:5112009-5111596 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 315 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 47, 127 |
| Conread position: | 62-548 |
| Cow position: | chr6:36234505-36234025 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 335 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 103, 40 |
| Conread position: | 62-802 |
| Cow position: | chr6:15154197-15154923 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 40 |
| Conread position: | 71-625 |
| Cow position: | chr6:54734433-54734964 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 388 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 66, 31 |
| Conread position: | 71-675 |
| Cow position: | chr6:4510618-4511233 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 31 |
| Conread position: | 71-708 |
| Cow position: | chr6:26748404-26747778 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 21 |
| Conread position: | 72-362 |
| Cow position: | chr6:66511622-66511921 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 96, 30 |
| Conread position: | 75-805 |
| Cow position: | chr6:38780118-38779382 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 27 |
| Conread position: | 98-756 |
| Cow position: | chr6:38988689-38988031 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 145 |
| Conread position: | 111-697 |
| Cow position: | chr6:27138965-27138396 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 187 |
| Conread position: | 113-625 |
| Cow position: | chr6:46881264-46881770 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 69 |
| Conread position: | 129-801 |
| Cow position: | chr6:17887867-17887199 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 423 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 12, 49 |
| Conread position: | 130-528 |
| Cow position: | chr6:1524820-1525213 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 49, 6 |
| Conread position: | 160-785 |
| Cow position: | chr6:31304218-31304833 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 395 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 111, 104 |
| Conread position: | 160-799 |
| Cow position: | chr6:10637649-10637048 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 212 |
| Conread position: | 160-802 |
| Cow position: | chr6:18463363-18462715 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 55 |
| Conread position: | 161-383 |
| Cow position: | chr6:892684-892466 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 165-467 |
| Cow position: | chr6:15329739-15330042 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 101, 223 |
| Conread position: | 166-572 |
| Cow position: | chr6:6838788-6839183 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 102, 84 |
| Conread position: | 181-773 |
| Cow position: | chr6:7049223-7049786 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 374 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 88, 59 |
| Conread position: | 194-539 |
| Cow position: | chr6:41119829-41120164 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 72, 89 |
| Conread position: | 206-576 |
| Cow position: | chr6:21720247-21719892 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 70, 89 |
| Conread position: | 207-517 |
| Cow position: | chr6:26063310-26063007 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 68, 138 |
| Conread position: | 210-753 |
| Cow position: | chr6:49380737-49380214 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 338 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 106, 21 |
| Conread position: | 214-799 |
| Cow position: | chr6:44858940-44859534 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 173 |
| Conread position: | 228-759 |
| Cow position: | chr6:17111900-17111369 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 153 |
| Conread position: | 241-667 |
| Cow position: | chr6:64812403-64811973 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 154 |
| Conread position: | 251-759 |
| Cow position: | chr6:17121678-17122186 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 329 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 52, 130 |
| Conread position: | 252-752 |
| Cow position: | chr6:67186830-67187337 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 324 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 25, 152 |
| Conread position: | 252-756 |
| Cow position: | chr6:17049662-17050164 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 338 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 25, 64 |
| Conread position: | 265-713 |
| Cow position: | chr6:53672635-53673091 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 297 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 12, 248 |
| Conread position: | 282-738 |
| Cow position: | chr6:16096378-16095909 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 306 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 122, 74 |
| Conread position: | 296-715 |
| Cow position: | chr6:58036620-58037033 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 183, 105 |
| Conread position: | 296-760 |
| Cow position: | chr6:17344538-17344993 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 83 |
| Conread position: | 296-798 |
| Cow position: | chr6:50526848-50527339 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 333 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 300-802 |
| Cow position: | chr6:54140270-54139778 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 82 |
| Conread position: | 302-502 |
| Cow position: | chr6:63762290-63762093 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 97, 77 |
| Conread position: | 320-798 |
| Cow position: | chr6:51385597-51386088 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 321 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 102, 62 |
Show alignments to all cow chromosomes.